Browse Element(s) Details


Os.12230.1.S1_a_at

Description gb:AK121093.1
DB_XREF= gi:37990716
TID=Os.12230.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyrophosphate-dependent phosphofructo-1-kinase (P0710E05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067A15, full insert sequence.
FL= gb:AK121093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0957011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g09570Os.12230.1.S1_a_at11/111+4902411..4906316Phosphofructokinase family protein, expressed
LOC_Os01g09580Os.613.1.S1_a_at11/111+4906785..4911172Serine/threonine-protein kinase Eg2, putative, expressed
LOC_Os01g09590Os.10204.1.S1_at10/111+4914717..4916026Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g09600NANA1+4929300..4935396retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12230.1.S1_a_at--435--5671Chr01:4905430..4905454 (25 bp)
GACATACATGATCCGTGCCGTCAGG
LOC_Os01g09570
Os.12230.1.S1_a_at--1156--531Chr01:4905440..4905464 (25 bp)
ATCCGTGCCGTCAGGTCAAACGCAT
LOC_Os01g09570
Os.12230.1.S1_a_at--578--9691Chr01:4905549..4905573 (25 bp)
TCAACGGCAGGCACGCGTATATCCC
LOC_Os01g09570
Os.12230.1.S1_a_at--1128--4631Chr01:4905563..4905709 (25 bp)
GCGTATATCCCGTTCTACAGAATCA
LOC_Os01g09570
Os.12230.1.S1_a_at--298--1691Chr01:4905776..4905800 (25 bp)
AGCCATGCTTCCTGAGCCACGAGGA
LOC_Os01g09570
Os.12230.1.S1_a_at--110--9032Chr01:4905839..4905863 (25 bp)
TGCACAACACGCAGCTCCTCGAAGG
LOC_Os01g09570
Os.12230.1.S1_a_at--174--2931Chr01:4905880..4905904 (25 bp)
AAGGACTCCTCCAAGTGCAACGGGA
LOC_Os01g09570
Os.12230.1.S1_a_at--461--5651Chr01:4905903..4905927 (25 bp)
GACAGCAGCGCCAGTGTGAGAACCA
LOC_Os01g09570
Os.12230.1.S1_a_at--1147--4992Chr01:4905980..4906004 (25 bp)
GCATGTAATTGTAGCTTTCTTTTTG
LOC_Os01g09570
Os.12230.1.S1_a_at--659--291Chr01:4906063..4906087 (25 bp)
ATAGCAAGGCTGGTTTCATCCTCGA
LOC_Os01g09570
Os.12230.1.S1_a_at--165--4731Chr01:4906071..4906095 (25 bp)
GCTGGTTTCATCCTCGAAGCAGAAT
LOC_Os01g09570
Target Sequence 
GACATACATGATCCGTGCCGTCAGGTCAAACGCATCCGACAACGTCTACTGCACCCTGCTAGCTCACAGCGCCCTCCACG
GCGCCATGGCGGGGTACACCGGCTTCACCGTCGCGCCGGTCAACGGCAGGCACGCGTATATCCCGTTCTACAGAATCACA
GAGAAGCAGAACAAGGTGGTGATCACGGACAGGATGTGGGCGAGGGTGCTGTGCTCGACGAACCAGCCATGCTTCCTGAG
CCACGAGGACGTCGAGCACCTCAAGCACGACGACGACGAGCACCACCTGCACAACACGCAGCTCCTCGAAGGCGAGAGCT
CGCCGGTGAAGGACTCCTCCAAGTGCAACGGGACAGCAGCGCCAGTGTGAGAACCAACGAGAATATATATATATATATAT
ATATATATATATATATATATATATATAAGCATGTAATTGTAGCTTTCTTTTTGTCCTTTTTTTCTGAAATGACATTGTGG
GGAAGCTACTGTAATAGAATTACCGTGTAATATAGCAAGGCTGGTTTCATCCTCGAAGCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12230.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis