Browse Element(s) Details


Os.27469.1.S1_a_at

Description gb:AK061716.1
DB_XREF= gi:32971734
TID=Os.27469.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710E05.22 (P0710E05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H07, full insert sequence.
FL= gb:AK106152.1 gb:AK061716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0955011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09520NANA1+4853889..4860240transposon protein, putative, unclassified, expressed
LOC_Os01g09530NANA1+4860680..4863917transposon protein, putative, unclassified
LOC_Os01g09540Os.1475.1.S1_at11/111+4868944..4870608plant acid phosphatase family protein, expressed
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g09570Os.12230.1.S1_a_at11/111+4902411..4906316Phosphofructokinase family protein, expressed
LOC_Os01g09580Os.613.1.S1_a_at11/111+4906785..4911172Serine/threonine-protein kinase Eg2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27469.1.S1_a_at--885--8451Chr01:4879981..4880005 (25 bp)
TGGCCAGGAACAACAGCCGCACCGG
LOC_Os01g09550
Os.27469.1.S1_a_at--592--8411Chr01:4879904..4879928 (25 bp)
GGCCGACGAACCCTGTATCAAATAT
LOC_Os01g09550
Os.27469.1.S1_a_at--951--10171Chr01:4879882..4879906 (25 bp)
TATAGTGCCACCAGCAATGCAGCAT
LOC_Os01g09550
Os.27469.1.S1_a_at--606--3011Chr01:4879867..4879891 (25 bp)
AATGCAGCATGCATCTGTCGTTCTT
LOC_Os01g09550
Os.27469.1.S1_a_at--910--4971Chr01:4879857..4879881 (25 bp)
GCATCTGTCGTTCTTGATCATGATC
LOC_Os01g09550
Os.27469.1.S1_a_at--294--8851Chr01:4879843..4879867 (25 bp)
TGATCATGATCAGTTCCACGTGCCA
LOC_Os01g09550
Os.27469.1.S1_a_at--1134--711Chr01:4879838..4879862 (25 bp)
ATGATCAGTTCCACGTGCCAGCAAT
LOC_Os01g09550
Os.27469.1.S1_a_at--536--2711Chr01:4878734..4878758 (25 bp)
AAGCTTGACAGGAGGTCTGCCGGCT
LOC_Os01g09550
Os.27469.1.S1_a_at--596--7171Chr01:4878720..4878744 (25 bp)
GTCTGCCGGCTTGGAGGAACTGATA
LOC_Os01g09550
Os.27469.1.S1_a_at--771--8171Chr01:4878705..4878729 (25 bp)
GGAACTGATAATGGGCTGCACGTCT
LOC_Os01g09550
Os.27469.1.S1_a_at--384--3851Chr01:4878690..4878714 (25 bp)
CTGCACGTCTTCGAGCACAAAAGGA
LOC_Os01g09550
Target Sequence 
TGGCCAGGAACAACAGCCGCACCGGCCGTTGCTTGCAACCACGACGGCGGTGCCTGCCACGGCCTTCCTGATCAGCCGGC
CGACGAACCCTGTATCAAATATAGTGCCACCAGCAATGCAGCATGCATCTGTCGTTCTTGATCATGATCAGTTCCACGTG
CCAGCAATCCTTCTCCACCACGACAAATTTCAGCAGCAGCAACAAAAGCTTGACAGGAGGTCTGCCGGCTTGGAGGAACT
GATAATGGGCTGCACGTCTTCGAGCACAAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27469.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis