Browse Element(s) Details


Os.37611.1.S1_at

Description gb:AK058815.1
DB_XREF= gi:32968833
TID=Os.37611.1
CNT=64
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S acidic ribosomal protein P2A (P0710E05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-F04, full insert sequence.
FL= gb:AK058815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0951011/1160S acidic ribosomal protein P2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09500NANA1+4846703..4848995expressed protein
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09520NANA1+4853889..4860240transposon protein, putative, unclassified, expressed
LOC_Os01g09530NANA1+4860680..4863917transposon protein, putative, unclassified
LOC_Os01g09540Os.1475.1.S1_at11/111+4868944..4870608plant acid phosphatase family protein, expressed
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37611.1.S1_at--408--5571Chr01:4851042..4851066 (25 bp)
GAAAGACTATGCTTCCTACTATGTT
LOC_Os01g09510
Os.37611.1.S1_at--977--631Chr01:4851050..4851074 (25 bp)
ATGCTTCCTACTATGTTTTGATATG
LOC_Os01g09510
Os.37611.1.S1_at--702--8751Chr01:4851073..4851097 (25 bp)
TGTAGTAACGCAGCCATAGGTTGCT
LOC_Os01g09510
Os.37611.1.S1_at--749--271Chr01:4851088..4851112 (25 bp)
ATAGGTTGCTGGTTACTTCACTGGT
LOC_Os01g09510
Os.37611.1.S1_at--1027--4711Chr01:4851095..4851119 (25 bp)
GCTGGTTACTTCACTGGTGAACCAT
LOC_Os01g09510
Os.37611.1.S1_at--874--2631Chr01:4851114..4851138 (25 bp)
AACCATGCTTTTGCTATCAAAATTC
LOC_Os01g09510
Os.37611.1.S1_at--947--3271Chr01:4851131..4851155 (25 bp)
CAAAATTCAATGCTTAATGGAGGAT
LOC_Os01g09510
Os.37611.1.S1_at--745--1611Chr01:4851180..4851204 (25 bp)
AGCTGTGTTCAATTATGTGTCCCTA
LOC_Os01g09510
Os.37611.1.S1_at--414--791Chr01:4851194..4851218 (25 bp)
ATGTGTCCCTATTTGTTCGGTGTTA
LOC_Os01g09510
Os.37611.1.S1_at--355--191Chr01:4851204..4851228 (25 bp)
ATTTGTTCGGTGTTATCAGCTCCCA
LOC_Os01g09510
Os.37611.1.S1_at--422--7751Chr01:4851212..4851236 (25 bp)
GGTGTTATCAGCTCCCAATTTGATT
LOC_Os01g09510
Target Sequence 
GAAAGACTATGCTTCCTACTATGTTTTGATATGTAGTAACGCAGCCATAGGTTGCTGGTTACTTCACTGGTGAACCATGC
TTTTGCTATCAAAATTCAATGCTTAATGGAGGATGAATTGTGCTCGGCNNNNAGTTTTTAGCTGTGTTCAATTATGTGTC
CCTATTTGTTCGGTGTTATCAGCTCCCAATTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis