Browse Element(s) Details


OsAffx.23170.1.S1_at

Description tigr:9629.m00896
TID=OsAffx.23170.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0948011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09500NANA1+4846703..4848995expressed protein
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09520NANA1+4853889..4860240transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23170.1.S1_at--735--2211Chr01:4834962..4834986 (25 bp)
ACAAGATCAACCAACAAACGAACAG
LOC_Os01g09480
OsAffx.23170.1.S1_at--489--5451Chr01:4834943..4834967 (25 bp)
GAACAGGCCAAAAATCCATAATTAT
LOC_Os01g09480
OsAffx.23170.1.S1_at--1026--3851Chr01:4833984..4834008 (25 bp)
CTGTTGGTTGGGATGAGAATACTTC
LOC_Os01g09480
OsAffx.23170.1.S1_at--667--9851Chr01:4833953..4833977 (25 bp)
TACAGGACCGTTGGATCTGAGTGCA
LOC_Os01g09480
OsAffx.23170.1.S1_at--506--3451Chr01:4833917..4833941 (25 bp)
CGGAAATGAGCCGTTGTTTAATGAT
LOC_Os01g09480
OsAffx.23170.1.S1_at--518--5871Chr01:4833910..4833934 (25 bp)
GAGCCGTTGTTTAATGATACCGATG
LOC_Os01g09480
OsAffx.23170.1.S1_at--1005--9951Chr01:4833893..4833917 (25 bp)
TACCGATGGGAATAGAGGACGTGAT
LOC_Os01g09480
OsAffx.23170.1.S1_at--106--1911Chr01:4833875..4833899 (25 bp)
ACGTGATGGAATATGCCCGTCTCAT
LOC_Os01g09480
OsAffx.23170.1.S1_at--729--8211Chr01:4833868..4833892 (25 bp)
GGAATATGCCCGTCTCATGACAAAT
LOC_Os01g09480
OsAffx.23170.1.S1_at--1128--7151Chr01:4833857..4833881 (25 bp)
GTCTCATGACAAATGGTACCTTCAA
LOC_Os01g09480
OsAffx.23170.1.S1_at--38--831Chr01:4833845..4833869 (25 bp)
ATGGTACCTTCAATTCATCCTCACT
LOC_Os01g09480
Target Sequence 
ACAAGATCAACCAACAAACGAACAGGCCAAAAATCCATAATTATTCAGCGATGGACACTGTTGGTTGGGATGAGAATACT
TCAGGGGATACAGGACCGTTGGATCTGAGTGCAGAGGGAGACAACGGAAATGAGCCGTTGTTTAATGATACCGATGGGAA
TAGAGGACGTGATGGAATATGCCCGTCTCATGACAAATGGTACCTTCAATTCATCCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis