Browse Element(s) Details


Os.10224.1.S1_at

Description gb:AK071179.1
DB_XREF= gi:32981202
TID=Os.10224.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084J18, full insert sequence.
FL= gb:AK071179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4000011/11Sedlin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10224.1.S1_at--951--6811Chr02:24193232..24193256 (25 bp)
GTTTCTTCCAGGAGGTTCACGAACT
LOC_Os02g40000
Os.10224.1.S1_at--1035--6151Chr02:24193243..24193266 (24 bp)
GAGGTTCACGAACTCTACATCAAGA
LOC_Os02g40000
Os.10224.1.S1_at--986--9871Chr02:24194897..24195004 (25 bp)
TACATCAAGATCTTCCTCAATCCAC
LOC_Os02g40000
Os.10224.1.S1_at--754--9971Chr02:24195007..24195031 (25 bp)
TACCTACCTGGTTCTCGCATCACAT
LOC_Os02g40000
Os.10224.1.S1_at--834--9771Chr02:24195048..24195072 (25 bp)
TAAGGTCAGGGCTCTTGCAAGGAAA
LOC_Os02g40000
Os.10224.1.S1_at--818--7351Chr02:24195093..24195117 (25 bp)
GTGAAGACTCTGTAAGCTCCACACC
LOC_Os02g40000
Os.10224.1.S1_at--33--7391Chr02:24195131..24195155 (25 bp)
GTGAGTAGCACTTGCCTTGTACTAG
LOC_Os02g40000
Os.10224.1.S1_at--506--5451Chr02:24195173..24195197 (25 bp)
GAACGTAGATCCTGAGACTAGCCTA
LOC_Os02g40000
Os.10224.1.S1_at--323--5691Chr02:24195188..24195212 (25 bp)
GACTAGCCTAGCAGTACCATTTACT
LOC_Os02g40000
Os.10224.1.S1_at--585--10651Chr02:24195271..24195295 (25 bp)
TTCCGGAGTTAGTAGACGCCCATTC
LOC_Os02g40000
Os.10224.1.S1_at--209--4191Chr02:24195289..24195313 (25 bp)
CCCATTCCTTGCCTGTACTGTACTT
LOC_Os02g40000
Target Sequence 
GTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCC
TCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCA
CACCGCCCTGTATTNTAGTGAGTAGCACTTGCCTTGTACTAGTTNTTCTACAATTGAATGAACGTAGATCCTGAGACTAG
CCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTANAAAAGTGCTCTGTTTGTNTTTTC
CGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis