Browse Element(s) Details


Os.10246.1.S1_at

Description gb:AK108078.1
DB_XREF= gi:32993287
TID=Os.10246.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H3 (P0505D12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E03, full insert sequence.
FL= gb:AK108078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1400011/11P21-ARC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein
LOC_Os02g14030OsAffx.24240.1.S1_at11/112+7658701..7659433hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005885cellular_componentArp2/3 protein complex
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10246.1.S1_at--48--8211Chr02:7645641..7645665 (25 bp)
GGAAGGTTGCTTAACTGCGCATACA
LOC_Os02g14000
Os.10246.1.S1_at--75--3831Chr02:7645655..7645679 (25 bp)
CTGCGCATACAGAGCTAATGGTACT
LOC_Os02g14000
Os.10246.1.S1_at--855--5331Chr02:7645738..7645762 (25 bp)
GAAGTATAGGTATTTTCCGCGACAT
LOC_Os02g14000
Os.10246.1.S1_at--1063--151Chr02:7645749..7645773 (25 bp)
ATTTTCCGCGACATGTTTGAGCAAT
LOC_Os02g14000
Os.10246.1.S1_at--4--3171Chr02:7645795..7645819 (25 bp)
AATTGCACTTGCGTACTTATTTCTG
LOC_Os02g14000
Os.10246.1.S1_at--472--2991Chr02:7645849..7645873 (25 bp)
AATGATTCTACACCTCGATTGATGG
LOC_Os02g14000
Os.10246.1.S1_at--515--2971Chr02:7645927..7645951 (25 bp)
AATGGATGAACACAAGGACACCTTT
LOC_Os02g14000
Os.10246.1.S1_at--117--8131Chr02:7645942..7645966 (25 bp)
GGACACCTTTCAGCTGTTATGTTGA
LOC_Os02g14000
Os.10246.1.S1_at--370--10331Chr02:7645976..7646000 (25 bp)
TTTCATTTTTATTGTACTCCGTCCG
LOC_Os02g14000
Os.10246.1.S1_at--403--2011Chr02:7645990..7646014 (25 bp)
TACTCCGTCCGTGCCCTTAAATTGG
LOC_Os02g14000
Os.10246.1.S1_at--913--5211Chr02:7646039..7646063 (25 bp)
GAATAGCGAATGTTCCGTGTAGGAC
LOC_Os02g14000
Target Sequence 
GGAAGGTTGCTTAACTGCGCATACAGAGCTAATGGTACTCCAAACAAATGGTGGTTGGCTTTTGCAAAGAGGAAATTCAT
GAACATTGTCATTCTTTGAAGTATAGGTATTTTCCGCGACATGTTTGAGCAATTGAGCAGCTTGTAGGAATGGTAATTGC
ACTTGCGTACTTATTTCTGCGAATACTTTAGAGAATTAAAGGAACGACAATGATTCTACACCTCGATTGATGGAGCCAAA
GGTTCTAATGAAACAATGGATAGAATGTCAACAATTTGTTTATTGCAATGGATGAACACAAGGACACCTTTCAGCTGTTA
TGTTGAATTTCTATTTTTCATTTTTATTGTACTCCGTCCGTGCCCTTAAATTGGGCATGTATTTTTCAGATGATGTTTGA
ATAGCGAATGTTCCGTGTAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis