Browse Element(s) Details


Os.11097.1.S1_at

Description gb:AK070679.1
DB_XREF= gi:32980703
TID=Os.11097.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062O22, full insert sequence.
FL= gb:AK070679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1399011/11U2 small nuclear ribonucleoprotein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13960Os.5133.1.S1_at11/112+7613140..7615367U-box domain containing protein, expressed
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein
LOC_Os02g14030OsAffx.24240.1.S1_at11/112+7658701..7659433hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005654cellular_componentnucleoplasm
GO:0005737cellular_componentcytoplasm
GO:0015030cellular_componentCajal body
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11097.1.S1_at--988--2431Chr02:7631873..7631897 (25 bp)
AAAAGTAGTTGCTCCAACACCTGAG
LOC_Os02g13990
Os.11097.1.S1_at--61--871Chr02:7631425..7631449 (25 bp)
AGGCACTGAGCACTGGCCAAATTCC
LOC_Os02g13990
Os.11097.1.S1_at--407--9011Chr02:7631397..7631421 (25 bp)
TGAATTTGCAATCCCCAAGCCAGAT
LOC_Os02g13990
Os.11097.1.S1_at--177--5571Chr02:7631282..7631303 (22 bp)
GAAAGCACCCCAATTGAAGAGGATT
LOC_Os02g13990
Os.11097.1.S1_at--1028--5131Chr02:7631090..7631114 (25 bp)
GCAAAGCCACATTGCGATGCCTGAT
LOC_Os02g13990
Os.11097.1.S1_at--945--6351Chr02:7631075..7631099 (25 bp)
GATGCCTGATCTCGTTGAATGCTCT
LOC_Os02g13990
Os.11097.1.S1_at--177--4731Chr02:7631049..7631073 (25 bp)
GCTGGTCTCTAGCATAGTACCGGTA
LOC_Os02g13990
Os.11097.1.S1_at--318--6991Chr02:7631033..7631057 (25 bp)
GTACCGGTATTTCTGTATCTTGTGA
LOC_Os02g13990
Os.11097.1.S1_at--825--6871Chr02:7630948..7630972 (25 bp)
GTATTTTATACCTTCCAGTACCGCT
LOC_Os02g13990
Os.11097.1.S1_at--26--10691Chr02:7630936..7630960 (25 bp)
TTCCAGTACCGCTAGATTTCTTGAT
LOC_Os02g13990
Os.11097.1.S1_at--541--7591Chr02:7630882..7630906 (25 bp)
GGGCATGCGAGATGTTCACTCTTAT
LOC_Os02g13990
Target Sequence 
AAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTG
CNAGGCTTGANNAGGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATGCTAATATGNCTGAT
GCTTCAGAGGAAACTGAAAAGATGGAGACAGATGGTCAGAACCAAGAAAATGGGGCGGATGAGAAGAAGCAAAATGAAGA
AAGCACCCCAATTGAAGAGGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAGATTTCCGTT
TTATTTGTGGGGGCAAAGCCACATTGCGATGCCTGATCTCGTTGAATGCTCTCGCTGGTCTCTAGCATAGTACCGGTATT
TCTGTATCTTGTGAATGCTAACATTTTTCAGAAGATGGAAAAACTATTTGCTGTGTTTAGGAAACAAGCTTGGGGTATTT
TATACCTTCCAGTACCGCTAGATTTCTTGATGTTGTAGACTGTAGACNCTGTTTCATGTGGGGCATGCGAGATGTTCACT
CTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis