Browse Element(s) Details


Os.5133.1.S1_at

Description gb:AK062592.1
DB_XREF= gi:32972610
TID=Os.5133.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H03, full insert sequence.
FL= gb:AK062592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1396011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13940NANA2+7591255..7591569hypothetical protein
LOC_Os02g13950Os.50488.1.S1_at11/112+7594952..7599868NHL repeat-containing protein, putative, expressed
LOC_Os02g13960Os.5133.1.S1_at11/112+7613140..7615367U-box domain containing protein, expressed
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5133.1.S1_at--375--3251Chr02:7614833..7614857 (25 bp)
CAAGCCTGATTGTCAAGATGTGCCA
LOC_Os02g13960
Os.5133.1.S1_at--827--2011Chr02:7614885..7614909 (25 bp)
ACTAGGGAGCACATTGACAGTCGTT
LOC_Os02g13960
Os.5133.1.S1_at--647--5651Chr02:7614900..7614924 (25 bp)
GACAGTCGTTGATCGTTCATTGGTA
LOC_Os02g13960
Os.5133.1.S1_at--795--5951Chr02:7614965..7614989 (25 bp)
GAGAATTGTCAAACCCGATTTCGAT
LOC_Os02g13960
Os.5133.1.S1_at--227--2611Chr02:7614976..7615000 (25 bp)
AACCCGATTTCGATATCAGTGCAGG
LOC_Os02g13960
Os.5133.1.S1_at--258--8971Chr02:7614995..7615019 (25 bp)
TGCAGGTGCCCTAGGTGAAAGGTTT
LOC_Os02g13960
Os.5133.1.S1_at--1057--10151Chr02:7615042..7615066 (25 bp)
TTACATTTGGTGAGTTTTGTCCCCA
LOC_Os02g13960
Os.5133.1.S1_at--727--3431Chr02:7615139..7615163 (25 bp)
CAGATGTTCCTATGTTTGTGTGTGA
LOC_Os02g13960
Os.5133.1.S1_at--462--7351Chr02:7615193..7615217 (25 bp)
GTGCAATTAGAGTTCCAGCTTGATG
LOC_Os02g13960
Os.5133.1.S1_at--433--8231Chr02:7615227..7615251 (25 bp)
GGCAAGCTCGGAAATTGTCCAATTT
LOC_Os02g13960
Os.5133.1.S1_at--672--6911Chr02:7615286..7615310 (25 bp)
GTATGCTGTATGCTGTAAACTGTTT
LOC_Os02g13960
Target Sequence 
CAAGCCTGATTGTCAAGATGTGCCANGAGAAGCCAAATGCCATCAGCAATGGCACTAGGGAGCACATTGACAGTCGTTGA
TCGTTCATTGGTAGGGAACANACACNANTTAAGGCGTGCTGCNGAGCTTTGGCAGTGGAGAATTGTCAAACCCGATTTCG
ATATCAGTGCAGGTGCCCTAGGTGAAAGGTTTNTACCCNTGGATTATATGGATGGTTACATTTGGTGAGTTTTGTCCCCA
AAATTCTTTCATTTCATGCTCCNATGAAGGTATACAAAATTTAATCCAAAGGATTTAATACTCGAAATATATCAGATGTT
CCTATGTTTGTGTGTGAAATGTGGATAACTGTGCAGACATATAGATGTGCAATTAGAGTTCCAGCTTGATGTTCCTCCTT
GGCAAGCTCGGAAATTGTCCAATTTTTGTTTTATTTTTTTATAAAAAAGCACCAAATATGTATGCTGTATGCTGTAAACT
GTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis