Browse Element(s) Details


Os.10254.1.S1_at

Description gb:AK066150.1
DB_XREF= gi:32976168
TID=Os.10254.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058G19, full insert sequence.
FL= gb:AK066150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3860011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10254.1.S1_at--83--2771Chr08:24265963..24265987 (25 bp)
AAGACCTGTTCCTGCCAGCAAAAAG
LOC_Os08g38600
Os.10254.1.S1_at--526--8011Chr08:24265939..24265963 (25 bp)
GGAGGCAGAATTTGCTCTTTCAGCA
LOC_Os08g38600
Os.10254.1.S1_at--468--8251Chr08:24265888..24265912 (25 bp)
GGCAGCAATAAACCTCCAACTTCTT
LOC_Os08g38600
Os.10254.1.S1_at--1023--8771Chr08:24265739..24265763 (25 bp)
TGTTACCTCCACCTGTGAGGGATTT
LOC_Os08g38600
Os.10254.1.S1_at--205--3071Chr08:24265676..24265700 (25 bp)
AATCTACTAGCTATGGGTCGCTGCA
LOC_Os08g38600
Os.10254.1.S1_at--212--6451Chr08:24265481..24265502 (22 bp)
GATCAGACTTGTCCAATCTGCTGGT
LOC_Os08g38600
Os.10254.1.S1_at--670--5431Chr08:24265446..24265470 (25 bp)
GAACCTTGCTTTTGGATGTGGGCAT
LOC_Os08g38600
Os.10254.1.S1_at--936--771Chr08:24265358..24265455 (25 bp)
ATGTGGGCATCAGACGTGCTCGGAC
LOC_Os08g38600
Os.10254.1.S1_at--1145--5291Chr08:24265328..24265352 (25 bp)
GAAGGATCTGAAGGTTTGCCCCATT
LOC_Os08g38600
Os.10254.1.S1_at--345--10211Chr08:24265314..24265338 (25 bp)
TTTGCCCCATTTGCCAGAGGGAAAT
LOC_Os08g38600
Os.10254.1.S1_at--384--5251Chr08:24265258..24265282 (25 bp)
GAATCTATACGCAATTGGCACTTTT
LOC_Os08g38600
Target Sequence 
AAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCNAGAACAGTTCAAGGCA
GCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCA
ACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTA
AACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCAT
CAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTA
CTGAAGTTGAGAATCTATACGCAATTGGCACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis