Browse Element(s) Details


Os.10404.1.S1_at

Description gb:BI797420
DB_XREF= gi:15849144
DB_XREF=H076E11
CLONE=H076E11
TID=Os.10404.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU076113(E20882)~unknown protein (OJ1123_C12.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0195011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10404.1.S1_at--343--7191Chr07:581930..581954 (25 bp)
GTCCGGTACGGCGTGTTATCGAAAG
LOC_Os07g01950
Os.10404.1.S1_at--1014--10411Chr07:581945..581969 (25 bp)
TTATCGAAAGCGCTGCCGACACGGC
LOC_Os07g01950
Os.10404.1.S1_at--250--8891Chr07:582010..582034 (25 bp)
TGAGGGCCCTCTCGATAGGTACATC
LOC_Os07g01950
Os.10404.1.S1_at--734--3851Chr07:584598..584700 (25 bp)
CTGAGAGCCTGATCCTTGAGCGCAT
LOC_Os07g01950
Os.10404.1.S1_at--175--8471Chr07:584746..584770 (25 bp)
TGGCGTCACTATTTCCGGGTACTTG
LOC_Os07g01950
Os.10404.1.S1_at--308--4951Chr07:584780..584804 (25 bp)
GCATTCGTTGCCCTTCTTACAGAGT
LOC_Os07g01950
Os.10404.1.S1_at--1113--1331Chr07:584800..584824 (25 bp)
AGAGTCCCAACTGCCAAAGCGTGAA
LOC_Os07g01950
Os.10404.1.S1_at--503--9831Chr07:584929..584953 (25 bp)
TAAATTGTTGACTCAGACCTCCCTT
LOC_Os07g01950
Os.10404.1.S1_at--933--5831Chr07:584944..584968 (25 bp)
GACCTCCCTTCAACATTTAACTGAG
LOC_Os07g01950
Os.10404.1.S1_at--307--7351Chr07:585014..585038 (25 bp)
GTGCAAATGCTTACCGGTGTTTCCT
LOC_Os07g01950
Os.10404.1.S1_at--631--8771Chr07:585031..585055 (25 bp)
TGTTTCCTTTTCGAATCCCTAATAG
LOC_Os07g01950
Target Sequence 
GTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACGGCTGCACATCAACAGCGGCCGAGNTCTCGACATCTCCGAGGC
TGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTT
TGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAAGAAGATTGGCACACACAATACG
AAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGGGTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTC
CCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAG
AGTACAAGGGTTTAGAAGTAATGTAGTNCCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACT
GAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAA
TCCCTAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis