Browse Element(s) Details


OsAffx.22516.1.S1_at

Description gb:NM_186176.1
DB_XREF= gi:34899437
GEN=OJ1123_C12.4
TID=OsAffx.22516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) gag-pol polyprotein-like (OJ1123_C12.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0197011/11retrotransposon protein, putative, unclassified
LOC_Os11g202602/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22516.1.S1_at--1111--8131Chr07:587365..587389 (25 bp)
GGACAACAGTTCTGGCACGGGCGTT
LOC_Os07g01970
OsAffx.22516.1.S1_at--1021--4631Chr07:587385..587409 (25 bp)
GCGTTCCTCGCTTCTATAAACTGGA
LOC_Os07g01970
OsAffx.22516.1.S1_at--782--1392Chr11:11685878..11685897 (20 bp)
AGACGATCCCCTCAATTGGTTCAAT
LOC_Os11g20260
OsAffx.22516.1.S1_at--732--811Chr07:587493..587517 (25 bp)
ATGGTGATCGTGTATGGCTGGCCAC
LOC_Os07g01970
OsAffx.22516.1.S1_at--843--451Chr07:587523..587547 (25 bp)
ATCTCACCGGTGACGCTCAGGAATG
LOC_Os07g01970
OsAffx.22516.1.S1_at--297--7872Chr11:11685990..11686252 (25 bp)
GGTATTTTCACTACGAGCAGCATCA
LOC_Os11g20260
OsAffx.22516.1.S1_at--11--4171Chr07:587578..587602 (25 bp)
CCCAGATTGGTACGCCTTCAAGGAA
LOC_Os07g01970
OsAffx.22516.1.S1_at--88--5211Chr07:587600..587624 (25 bp)
GAATTGTGCCATGCCCAATTTGGGC
LOC_Os07g01970
OsAffx.22516.1.S1_at--1021--8971Chr07:587655..587679 (25 bp)
TGAAGCGGCTATATCAGGCCTCCTC
LOC_Os07g01970
OsAffx.22516.1.S1_at--62--7732Chr07:587680..587704 (25 bp)
GGTGGCTGCCTACCAGACAAAATTT
LOC_Os07g01970
OsAffx.22516.1.S1_at--768--1671Chr07:587730..587754 (25 bp)
AGCCGCTCACTGACTTGCAACAAAT
LOC_Os07g01970
Target Sequence 
GGACAACAGTTCTGGCACGGGCGTTCCTCGCTTCTATAAACTGGAATTTCCCAAATATGACGGCAAAGACGATCCCCTCA
ATTGGTTCAATCATTGTGAACAATTCTTCCGAGGACAGAAGACACCGGATGGTGATCGTGTATGGCTGGCCACGTACCAT
CTCACCGGTGACGCTCAGGAATGGTATTTTCACTACGAGCAGCATCACGGACCCCCAGATTGGTACGCCTTCAAGGAATT
GTGCCATGCCCAATTTGGGCCGCCAATCCATCGCAATGCCCTGGGCGAACTGAAGCGGCTATATCAGGCCTCCTCGGTGG
CTGCCTACCAGACAAAATTTCTGGCATTGGCAAGCCGGACGACGGAGCCGCTCACTGACTTGCAACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis