Browse Element(s) Details


Os.10428.1.S1_at

Description gb:AK099886.1
DB_XREF= gi:32985095
TID=Os.10428.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112B18, full insert sequence.
FL= gb:AK068642.1 gb:AK104670.1 gb:AK099886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1417011/11Peroxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14150Os.55414.1.S1_at1/112+7743037..7746697hAT family dimerisation domain containing protein
LOC_Os02g14160NANA2+7751298..7753199Peroxidase 52 precursor, putative, expressed
LOC_Os02g14170Os.10428.1.S1_at11/112+7760923..7762488Peroxidase precursor, putative, expressed
LOC_Os02g14180NANA2+7770037..7771053Peroxidase family protein
LOC_Os02g14190Os.53584.1.S1_at11/112+7772398..7776160Spermine/spermidine synthase family protein, expressed
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10428.1.S1_at--212--9911Chr02:7761906..7761930 (25 bp)
TACTGCGACGCCAACGTGAGCCCGG
LOC_Os02g14170
Os.10428.1.S1_at--448--3991Chr02:7762159..7762183 (25 bp)
CGTCCATGATCAGGCTCGGGAACAT
LOC_Os02g14170
Os.10428.1.S1_at--1103--5431Chr02:7762178..7762202 (25 bp)
GAACATCGGCCCGTTGACCGGGTCA
LOC_Os02g14170
Os.10428.1.S1_at--565--7351Chr02:7762233..7762257 (25 bp)
GTGAATTCCTGATCGATACTACTAG
LOC_Os02g14170
Os.10428.1.S1_at--438--331Chr02:7762248..7762272 (25 bp)
ATACTACTAGATAGCATTGCCGCGC
LOC_Os02g14170
Os.10428.1.S1_at--425--10691Chr02:7762264..7762288 (25 bp)
TTGCCGCGCGCAAATTGTTCATAGT
LOC_Os02g14170
Os.10428.1.S1_at--946--9751Chr02:7762307..7762331 (25 bp)
TAATCAGCTGTCAATTTCATGTATT
LOC_Os02g14170
Os.10428.1.S1_at--808--7211Chr02:7762365..7762389 (25 bp)
GTCCCAATTTTAGACATCAATCACT
LOC_Os02g14170
Os.10428.1.S1_at--1003--10051Chr02:7762389..7762413 (25 bp)
TAGTGGATAATTCTTCCGTTTGTTC
LOC_Os02g14170
Os.10428.1.S1_at--1036--10471Chr02:7762420..7762444 (25 bp)
TTAAACCTTGCTTAATTCAGCTACC
LOC_Os02g14170
Os.10428.1.S1_at--51--4831Chr02:7762439..7762464 (25 bp)
GCTACCTGTAACTATTGCGACGGCT
LOC_Os02g14170
Target Sequence 
TACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCCGCGCT
GGCGCCGCTGGACTCCCTGACCCCCGACGCGTTCGACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGC
ACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCTCG
TCGGACTTCGCCGCGTCCATGATCAGGCTCGGGAACATCGGCCCGTTGACCGGGTCAACCGGCGAGGTCAGGCTCAACTG
CAGGAAAGTGAATTCCTGATCGATACTACTAGATAGCATTGCCGCGCGCAAATTGTTCATAGTACAAAGTTTAAAGTTAT
ATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAAT
CACTAGTGGATAATTCTTCCGTTTGTTCNATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis