Browse Element(s) Details


Os.10449.1.S1_a_at

Description gb:AK067281.1
DB_XREF= gi:32977299
TID=Os.10449.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acid cluster protein 33 (OSJNBb0081F12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100H18, full insert sequence.
FL= gb:AK067281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0884011/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10449.1.S1_a_at--724--7571Chr10:4554169..4554193 (25 bp)
GGTCCAAGGTTTCACACGTAATGGC
LOC_Os10g08840
Os.10449.1.S1_a_at--728--10511Chr10:4554179..4554203 (25 bp)
TTCACACGTAATGGCAGTGCTGGGA
LOC_Os10g08840
Os.10449.1.S1_a_at--629--1131Chr10:4554194..4554218 (25 bp)
AGTGCTGGGAGCTCAAAGGACCAAA
LOC_Os10g08840
Os.10449.1.S1_a_at--758--2231Chr10:4554231..4554255 (25 bp)
ACAATTTTGACAATCATCCTGGAGA
LOC_Os10g08840
Os.10449.1.S1_a_at--1082--551Chr10:4554246..4554270 (25 bp)
ATCCTGGAGATAATGGTGGCCCTGG
LOC_Os10g08840
Os.10449.1.S1_a_at--897--8531Chr10:4554250..4554274 (25 bp)
TGGAGATAATGGTGGCCCTGGTTCA
LOC_Os10g08840
Os.10449.1.S1_a_at--915--8831Chr10:4554283..4554307 (25 bp)
TGATCATGAGACACAGAATTCTGGA
LOC_Os10g08840
Os.10449.1.S1_a_at--394--111Chr10:4554300..4554324 (25 bp)
ATTCTGGATCAGAATCACATGATTC
LOC_Os10g08840
Os.10449.1.S1_a_at--218--6331Chr10:4554326..4554350 (25 bp)
GATGAATCAATACCAACGAGCACAA
LOC_Os10g08840
Os.10449.1.S1_a_at--1083--4071Chr10:4554342..4554366 (25 bp)
CGAGCACAATGCTTGCCAATACCAT
LOC_Os10g08840
Os.10449.1.S1_a_at--1022--4911Chr10:4554352..4554376 (25 bp)
GCTTGCCAATACCATTCTAGGTACG
LOC_Os10g08840
Target Sequence 
GGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATC
CTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGAT
GAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10449.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis