Browse Element(s) Details


Os.10488.1.S1_at

Description gb:AK062441.1
DB_XREF= gi:32972459
TID=Os.10488.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-A12, full insert sequence.
FL= gb:AK062441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4368010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43640NANA5+25293730..25296862expressed protein
LOC_Os05g43650Os.27836.2.S1_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.1.A1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.2.S1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43660NANA5+25304270..25304632hypothetical protein
LOC_Os05g43670Os.25372.1.S1_at11/115+25307526..25309273IQ calmodulin-binding motif family protein, expressed
LOC_Os05g43680Os.10488.1.S1_at10/115+25309661..25312841expressed protein
LOC_Os05g43690Os.9551.1.S1_at11/115+25316242..25318637expressed protein
LOC_Os05g43700OsAffx.15088.1.S1_at11/115+25319209..25321266hypothetical protein
LOC_Os05g43709NANA5+25323958..25324392NA
LOC_Os05g43720NANA5+25329588..25330037transposon protein, putative, unclassified
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10488.1.S1_at--640--511Chr05:25310519..25310543 (25 bp)
ATCGTCACTTTGTTATCTATGGTCT
LOC_Os05g43680
Os.10488.1.S1_at--264--9911Chr05:25310361..25310385 (25 bp)
TACTGGACCGATTCTTCAACCTAGA
LOC_Os05g43680
Os.10488.1.S1_at--118--5271Chr05:25310086..25310110 (25 bp)
GAATGATAGCCCAGTAACCCTGCAG
LOC_Os05g43680
Os.10488.1.S1_at--658--5071Chr05:25310065..25310089 (25 bp)
GCAGCGCAACATCCTTCGTAATTTA
LOC_Os05g43680
Os.10488.1.S1_at--587--6271Chr05:25309827..25309851 (25 bp)
GATGTTTCCAATGATTCTCTTGCGT
LOC_Os05g43680
Os.10488.1.S1_at--830--111Chr05:25309814..25309838 (25 bp)
ATTCTCTTGCGTAGACATCTCTTGA
LOC_Os05g43680
Os.10488.1.S1_at--1148--9571Chr05:25309795..25309819 (25 bp)
TCTTGACGGCACACTTCGAACTGAA
LOC_Os05g43680
Os.10488.1.S1_at--1130--5551Chr05:25309773..25309797 (25 bp)
GAAAGAACACATTTTGCTCGGCCGT
LOC_Os05g43680
Os.10488.1.S1_at--674--4251Chr05:25309752..25309776 (25 bp)
CCGTGTCTTTGTGTTAGTGCTTACT
LOC_Os05g43680
Os.10488.1.S1_at--372--1171Chr05:25309672..25309696 (25 bp)
AGTACCCGTTAACTATCAGTGCCGT
LOC_Os05g43680
Os.10488.1.S1_at--734--3451Chr05:25309660..25309680 (21 bp)
CAGTGCCGTTTCTTCGCTCTAAAAA
NONE
Target Sequence 
ATCGTCACTTTGTTATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTA
CAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGA
ATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTA
ACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAA
AGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTACAGCTTCTGTTGACTTAGGNTATGCAG
TCAATGGTACGGGNTCTCAGTACCCGTTAACTATCAGTGCCGTTTCTTCGCTCTAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis