Browse Element(s) Details


Os.27836.2.S1_s_at

Description gb:CB684897
DB_XREF= gi:29688622
DB_XREF=OSJNEf14N21.f
CLONE=OSJNEf14N21
TID=Os.27836.2
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27836 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566129.1 (A.thaliana) unknown protin (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43640NANA5+25293730..25296862expressed protein
LOC_Os05g43650Os.27836.2.S1_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.1.A1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.2.S1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43660NANA5+25304270..25304632hypothetical protein
LOC_Os05g43670Os.25372.1.S1_at11/115+25307526..25309273IQ calmodulin-binding motif family protein, expressed
LOC_Os05g43680Os.10488.1.S1_at10/115+25309661..25312841expressed protein
LOC_Os05g43690Os.9551.1.S1_at11/115+25316242..25318637expressed protein
LOC_Os05g43700OsAffx.15088.1.S1_at11/115+25319209..25321266hypothetical protein
LOC_Os05g43709NANA5+25323958..25324392NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27836.2.S1_s_at--267--7291Chr05:25299356..25299380 (25 bp)
GTGCCGAGCGGTTCTACTTCAACTT
LOC_Os05g43650
Os.27836.2.S1_s_at--943--3971Chr05:25299752..25299776 (25 bp)
CGGTGGAGCACATCGTGCTGCCGAC
LOC_Os05g43650
Os.27836.2.S1_s_at--438--10631Chr05:25299778..25299802 (25 bp)
TTCGCCTACGAGCACAAGGTCTTCT
LOC_Os05g43650
Os.27836.2.S1_s_at--165--5951Chr05:25299787..25299811 (25 bp)
GAGCACAAGGTCTTCTTCGGGCCAT
LOC_Os05g43650
Os.27836.2.S1_s_at--122--9551Chr05:25299797..25299821 (25 bp)
TCTTCTTCGGGCCATTCACCAGGAA
LOC_Os05g43650
Os.27836.2.S1_s_at--1126--111Chr05:25299810..25299834 (25 bp)
ATTCACCAGGAAATTCCCCAGGGCG
LOC_Os05g43650
Os.27836.2.S1_s_at--248--931Chr05:25299853..25299877 (25 bp)
AGGCAGTGGAGCTGGCCGATCAACC
LOC_Os05g43650
Os.27836.2.S1_s_at--10--9171Chr05:25299878..25299902 (25 bp)
TGCCGCTGGAGTTCTTCGGGATCTT
LOC_Os05g43650
Os.27836.2.S1_s_at--1155--1511Chr05:25299959..25299983 (25 bp)
AGCAGAAGATGCTCAGCTCGCCTGA
LOC_Os05g43650
Os.27836.2.S1_s_at--746--4791Chr05:25299974..25300101 (25 bp)
GCTCGCCTGAAGTTGGGATTGGACC
LOC_Os05g43650
Os.27836.2.S1_s_at--773--5811Chr05:25300098..25300122 (25 bp)
GACCCTATGTGGAGGTGGCATTCTA
LOC_Os05g43650
Target Sequence 
GTGCCGAGCGGTTCTACTTCAACTTCACCGGGTTCCCCTTCCCGCTCGGGCCGTTCCTCAACCGCCGCACCATCCGCACC
GAGGCGGTGAAGGGGAGGATATGGCTGTTCGAGCAGGAGCAGGCACTGGGGTTCAGCAGCGTCTCCACCAACACCCGCAT
GACCGTCATCAAGCTCAAGTCCGGCGGCCTCTGGGTGCACGCCCCCATCGCGCCGACCAAGGAGTGCATCCAGCTTCTCA
AGGAGCTCGACGCGCCGGTGGAGCACATCGTGCTGCCGACCTTCGCCTACGAGCACAAGGTCTTCTTCGGGCCATTCACC
AGGAAATTCCCCAGGGCGCAGATATGGGTGGCGCCCAGGCAGTGGAGCTGGCCGATCAACCTGCCGCTGGAGTTCTTCGG
GATCTTCCGGGCCAAGCCCCTCCAAGACGAGGACGACGACACCCCATGGGCGGGCGAGATCGAGCAGAAGATGCTCAGCT
CGCCTGAAGTTGGGATTGGACCCTATGTGGAGGTGGCATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27836.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis