Browse Element(s) Details


OsAffx.15088.1.S1_at

Description tigr:9633.m04067
TID=OsAffx.15088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4370011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43640NANA5+25293730..25296862expressed protein
LOC_Os05g43650Os.27836.2.S1_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.1.A1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.2.S1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43660NANA5+25304270..25304632hypothetical protein
LOC_Os05g43670Os.25372.1.S1_at11/115+25307526..25309273IQ calmodulin-binding motif family protein, expressed
LOC_Os05g43680Os.10488.1.S1_at10/115+25309661..25312841expressed protein
LOC_Os05g43690Os.9551.1.S1_at11/115+25316242..25318637expressed protein
LOC_Os05g43700OsAffx.15088.1.S1_at11/115+25319209..25321266hypothetical protein
LOC_Os05g43709NANA5+25323958..25324392NA
LOC_Os05g43720NANA5+25329588..25330037transposon protein, putative, unclassified
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified
LOC_Os05g43740NANA5+25341655..25344451retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15088.1.S1_at--995--8951Chr05:25319501..25319525 (25 bp)
TGACAGGGAACACCACGCCTAAGGT
LOC_Os05g43700
OsAffx.15088.1.S1_at--263--2151Chr05:25319492..25319516 (25 bp)
ACACCACGCCTAAGGTAGTAGTTGG
LOC_Os05g43700
OsAffx.15088.1.S1_at--309--7991Chr05:25319422..25319446 (25 bp)
GGATGACGCCCTTGAGCACGAGAAG
LOC_Os05g43700
OsAffx.15088.1.S1_at--512--711Chr05:25319357..25319381 (25 bp)
ATGATGATGAGCAGGGCCACGATGT
LOC_Os05g43700
OsAffx.15088.1.S1_at--1091--1511Chr05:25319348..25319372 (25 bp)
AGCAGGGCCACGATGTCCGAGGCAC
LOC_Os05g43700
OsAffx.15088.1.S1_at--454--6271Chr05:25319337..25319361 (25 bp)
GATGTCCGAGGCACGCTTGAGAGTC
LOC_Os05g43700
OsAffx.15088.1.S1_at--855--4231Chr05:25319332..25319356 (25 bp)
CCGAGGCACGCTTGAGAGTCTGAGA
LOC_Os05g43700
OsAffx.15088.1.S1_at--105--8032Chr11:6895058..6895136 (25 bp)
GGAGGGAGCCAAAACCGGTCACTAT
NONE
OsAffx.15088.1.S1_at--912--2591Chr05:25319263..25319287 (25 bp)
AACCGGTCACTATACTGTCGAGGGA
LOC_Os05g43700
OsAffx.15088.1.S1_at--800--8711Chr05:25319248..25319272 (25 bp)
TGTCGAGGGACCAAAGCTAACACTT
LOC_Os05g43700
OsAffx.15088.1.S1_at--1148--8071Chr05:25319241..25319265 (25 bp)
GGACCAAAGCTAACACTTAGGCATG
LOC_Os05g43700
Target Sequence 
TGACAGGGAACACCACGCCTAAGGTAGTAGTTGGTGGTGGAGGAGGACTAGGTGGTGAGAACAGAGTCGTGGTCGTGGGG
GATGACGCCCTTGAGCACGAGAAGGGCAGCGAGGTCGGTGGAGGTGGAGGATGCCGACGAGGTGATGATGATGAGCAGGG
CCACGATGTCCGAGGCACGCTTGAGAGTCTGAGAGATGGGGAAGAGAGGGAAGAAGGAGAGGGAGAGGAGGGAGCCAAAA
CCGGTCACTATACTGTCGAGGGACCAAAGCTAACACTTAGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis