Browse Element(s) Details


Os.10490.1.S1_at

Description gb:AK105257.1
DB_XREF= gi:32990466
TID=Os.10490.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094F01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G01, full insert sequence.
FL= gb:AK062757.1 gb:AK105257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5823011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58220OsAffx.21756.1.S1_at11/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.3.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.2.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10490.1.S1_at--983--331Chr03:33110480..33110504 (25 bp)
ATAATAACTACCACTCTCCTAGAAC
LOC_Os03g58230
Os.10490.1.S1_at--355--1711Chr03:33110512..33110536 (25 bp)
ACCACTACCATCACTAGTTCATCGA
LOC_Os03g58230
Os.10490.1.S1_at--593--3711Chr03:33110525..33110549 (25 bp)
CTAGTTCATCGATTCTTTTCTTTGT
LOC_Os03g58230
Os.10490.1.S1_at--912--5951Chr03:33110652..33110676 (25 bp)
GAGAAAAAACACTTTGCGTTCCAAT
LOC_Os03g58230
Os.10490.1.S1_at--446--7591Chr03:33110749..33110773 (25 bp)
GGGCTTTTTGTGAAGCTGCTGTTCT
LOC_Os03g58230
Os.10490.1.S1_at--853--1791Chr03:33110776..33110800 (25 bp)
ACCCCTTCTGCCGAGTAGAACTAGT
LOC_Os03g58230
Os.10490.1.S1_at--345--2871Chr03:33110831..33110855 (25 bp)
AAGTGATGCTACTTGCTTGCTTGCT
LOC_Os03g58230
Os.10490.1.S1_at--396--4771Chr03:33110876..33110900 (25 bp)
GCTGCTTCTCCACTTGTAGTTGGAT
LOC_Os03g58230
Os.10490.1.S1_at--115--10351Chr03:33110938..33110962 (25 bp)
TTTTTAGTATTACCGCCCATCCTTG
LOC_Os03g58230
Os.10490.1.S1_at--1114--1771Chr03:33110949..33110973 (25 bp)
ACCGCCCATCCTTGTTAAGTTGTAG
LOC_Os03g58230
Os.10490.1.S1_at--1146--6631Chr03:33110967..33110991 (25 bp)
GTTGTAGCACTTGTAATCTCCATGG
LOC_Os03g58230
Target Sequence 
ATAATAACTACCACTCTCCTAGAACTACTACCACCACTACCATCACTAGTTCATCGATTCTTTTCTTTGTTTTCCTCTCC
TCTTTTTCGTTTCTTTTTCCACCGCGCGCTTCGATCCGTTTGGGGATCTAGTTTTTGGTGTTTTGGGGTTTTCCGGGGTT
TTTTTCGGAAAAGAGAAAAAACACTTTGCGTTCCAATTTTTTTCCCTCTCATCTTCCCTTTCCCCCCTCTTCTTTTTTTG
ACCCTTGTAATTTTTGGTTTTAGCATTAGGGGCTTTTTGTGAAGCTGCTGTTCTTCACCCCTTCTGCCGAGTAGAACTAG
TAATCTGTTACAGATTGTAAGCAGAGTGATCAAGTGATGCTACTTGCTTGCTTGCTGCAAAGCCTCGTGATCTTCTGCTG
CTTCTCCACTTGTAGTTGGATAAATCCTAAAAAAAAAGTTTCCCTCTTGTTTTACCAGTTTTTAGTATTACCGCCCATCC
TTGTTAAGTTGTAGCACTTGTAATCTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis