Browse Element(s) Details


Os.10542.1.S1_at

Description gb:AK073862.1
DB_XREF= gi:32983885
TID=Os.10542.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073H23, full insert sequence.
FL= gb:AK073862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0262011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02560OsAffx.31554.1.S1_at9/1112+880780..882971hypothetical protein
LOC_Os12g02560OsAffx.31656.2.S1_at3/1112+880780..882971hypothetical protein
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10542.1.S1_at--180--9411Chr12:907154..907178 (25 bp)
TCGTCAGATGGCTGCTGGTGTGATC
LOC_Os12g02620
Os.10542.1.S1_at--178--4031Chr12:907155..907179 (25 bp)
CGTCAGATGGCTGCTGGTGTGATCG
LOC_Os12g02620
Os.10542.1.S1_at--645--9651Chr12:907157..907181 (25 bp)
TCAGATGGCTGCTGGTGTGATCGAA
LOC_Os12g02620
Os.10542.1.S1_at--319--2731Chr12:907543..907567 (25 bp)
AAGAATTCACATGCCACCGGTTGTA
LOC_Os12g02620
Os.10542.1.S1_at--318--5211Chr12:907545..907569 (25 bp)
GAATTCACATGCCACCGGTTGTAAA
LOC_Os12g02620
Os.10542.1.S1_at--210--3151Chr12:907546..907570 (25 bp)
AATTCACATGCCACCGGTTGTAAAA
LOC_Os12g02620
Os.10542.1.S1_at--343--131Chr12:907547..907571 (25 bp)
ATTCACATGCCACCGGTTGTAAAAG
LOC_Os12g02620
Os.10542.1.S1_at--121--10511Chr12:907548..907572 (25 bp)
TTCACATGCCACCGGTTGTAAAAGA
LOC_Os12g02620
Os.10542.1.S1_at--234--3311Chr12:907550..907574 (25 bp)
CACATGCCACCGGTTGTAAAAGAAT
LOC_Os12g02620
Os.10542.1.S1_at--267--2111Chr12:907551..907575 (25 bp)
ACATGCCACCGGTTGTAAAAGAATT
LOC_Os12g02620
Os.10542.1.S1_at--1048--3511Chr12:907552..907576 (25 bp)
CATGCCACCGGTTGTAAAAGAATTC
LOC_Os12g02620
Target Sequence 
TCGTCAGATGGCTGCTGGTGTGATCGAAGAGACTAATACAAGTGAACACAATGTTCGTGTTGATGAGCAACCAAACAGTG
CACGCAGGCGCAGTGGATGGCTTTTTATTGCTGCTGCTCCAGTTGTAAGCCTCATCGGTTTCGCTCTAGTTTTATGCTTT
ACAAATCCCGCTAGGAGTGGTAGAAGGCAACTGTACTGTAGATCCCCAAGTGCCACTGAAGTACATGTGGACACCAAAAA
GAGTTGGTGGTCTATGTTCTAGAATGTTCCGTTGGTACATCTGATAACAAAATGACTATATGGTGGTGNGTGATTGTTTC
TTTAGAATAGTTTTATTTTAAAATTTTCAAACGTTGTAGTTGCTGCAGTTACCGGTCNGAGTGTTGTAAAAGAATTCACA
TGCCACCGGTTGTAAAAGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis