Browse Element(s) Details


Os.47955.1.S1_at

Description gb:AK066943.1
DB_XREF= gi:32976961
TID=Os.47955.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089N23, full insert sequence.
FL= gb:AK066943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0264011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47955.1.S1_at--462--1731Chr12:915312..915336 (25 bp)
ACCGATTGAAGTGTTACTTATTTGT
LOC_Os12g02640
Os.47955.1.S1_at--891--4231Chr12:915313..915337 (25 bp)
CCGATTGAAGTGTTACTTATTTGTG
LOC_Os12g02640
Os.47955.1.S1_at--522--6592Chr12:915315..915339 (25 bp)
GATTGAAGTGTTACTTATTTGTGGA
LOC_Os12g02640
Os.47955.1.S1_at--861--5312Chr12:915319..915343 (25 bp)
GAAGTGTTACTTATTTGTGGAATGA
LOC_Os12g02640
Os.47955.1.S1_at--1140--2831Chr12:915320..915344 (25 bp)
AAGTGTTACTTATTTGTGGAATGAA
LOC_Os12g02640
Os.47955.1.S1_at--597--7511Chr12:915335..915359 (25 bp)
GTGGAATGAAACTTTTACTTCTCGT
LOC_Os12g02640
Os.47955.1.S1_at--41--8511Chr12:915336..915360 (25 bp)
TGGAATGAAACTTTTACTTCTCGTC
LOC_Os12g02640
Os.47955.1.S1_at--1044--8191Chr12:915337..915361 (25 bp)
GGAATGAAACTTTTACTTCTCGTCT
LOC_Os12g02640
Os.47955.1.S1_at--936--5211Chr12:915338..915362 (25 bp)
GAATGAAACTTTTACTTCTCGTCTG
LOC_Os12g02640
Os.47955.1.S1_at--499--2991Chr12:915339..915363 (25 bp)
AATGAAACTTTTACTTCTCGTCTGT
LOC_Os12g02640
Os.47955.1.S1_at--1077--631Chr12:915340..915364 (25 bp)
ATGAAACTTTTACTTCTCGTCTGTC
LOC_Os12g02640
Target Sequence 
ACCGATTGAAGTGTTACTTATTTGTGGAATGAAACTTTTACTTCTCGTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis