Browse Element(s) Details


Os.56293.1.S1_at

Description gb:AK109783.1
DB_XREF= gi:32994992
TID=Os.56293.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C08, full insert sequence.
FL= gb:AK109783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0268010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56293.1.S1_at--415--4991Chr12:935962..935986 (25 bp)
GCATGCATGCAGTTGTTCGCTTCGC
LOC_Os12g02680
Os.56293.1.S1_at--1071--10631Chr12:935977..936001 (25 bp)
TTCGCTTCGCCTGGATGAGTGATTT
LOC_Os12g02680
Os.56293.1.S1_at--360--211Chr12:935998..936022 (25 bp)
ATTTGAGTCTCATGGGTGGCGTTGT
LOC_Os12g02680
Os.56293.1.S1_at--708--9531Chr12:936150..936288 (25 bp)
TCTATGATGAATTTGCCTGCGGCGT
LOC_Os12g02680
Os.56293.1.S1_at--1133--6151Chr12:936306..936330 (25 bp)
GAGGATAAACCCATCGAGGCCATCT
LOC_Os12g02680
Os.56293.1.S1_at--797--511Chr12:936318..936342 (25 bp)
ATCGAGGCCATCTCAATTACTGGCA
LOC_Os12g02680
Os.56293.1.S1_at--27--3151Chr12:936332..936356 (25 bp)
AATTACTGGCATCCTTTGTGCTTCA
LOC_Os12g02680
Os.56293.1.S1_at--542--10511Chr12:936353..936377 (25 bp)
TTCACCTAGGCAATGTACAGTTAGA
LOC_Os12g02680
Os.56293.1.S1_at--1037--7031Chr12:936385..936409 (25 bp)
GTAAAGGTCTGATTCTGCCTATAAA
LOC_Os12g02680
Os.56293.1.S1_at--1016--3051Chr12:936414..936438 (25 bp)
AATCATTAGCCTACGGTCAGTGGAA
LOC_Os12g02680
Os.56293.1.S1_at--1012--2831Chr12:936538..936562 (25 bp)
AAGTAGCACTGCATTTGTAATCAAT
NONE
Target Sequence 
GCATGCATGCAGTTGTTCGCTTCGCCTGGATGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCT
TTCAAGCATTGGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATGGCCTCCAA
CTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCGTGTGGTACTGCAATAGGGGAGGATAAAC
CCATCGAGGCCATCTCAATTACTGGCATCCTTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTG
ATTCTGCCTATAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGAGACCTAAC
ATTGATTTTATATTATGGACTTAAATCTGAAATTGATTTTGCTTGATGGATTTGAAATAAAAAAGTAGCACTGCATTTGT
AATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis