Browse Element(s) Details


Os.53587.1.S1_at

Description gb:AK073422.1
DB_XREF= gi:32983445
TID=Os.53587.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044A06, full insert sequence.
FL= gb:AK073422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0272011/11eukaryotic translation initiation factor 2B family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53587.1.S1_at--55--2111Chr12:953876..953900 (25 bp)
ACATGCTCCGCGTAAGTCCAAAATT
LOC_Os12g02720
Os.53587.1.S1_at--294--2251Chr12:953856..953880 (25 bp)
AAATTCTTCCTTCTGTACAGTAGAG
LOC_Os12g02720
Os.53587.1.S1_at--355--1191Chr12:953838..953862 (25 bp)
AGTAGAGACATTGAGCTCGCTGCAA
LOC_Os12g02720
Os.53587.1.S1_at--539--4271Chr12:953789..953813 (25 bp)
CCTGTCAGCGACTCAGAAGCAGTGT
LOC_Os12g02720
Os.53587.1.S1_at--726--1451Chr12:953775..953799 (25 bp)
AGAAGCAGTGTTCCCGCAGCAGAGT
LOC_Os12g02720
Os.53587.1.S1_at--886--6091Chr12:953754..953778 (25 bp)
GAGTCTAGCTAGATGCAGGGCACTA
LOC_Os12g02720
Os.53587.1.S1_at--552--6331Chr12:953743..953767 (25 bp)
GATGCAGGGCACTAAACACCCAGAA
LOC_Os12g02720
Os.53587.1.S1_at--690--6051Chr12:953685..953709 (25 bp)
GAGTTGGTGCTGTATGCTACAATCA
LOC_Os12g02720
Os.53587.1.S1_at--543--2831Chr12:953661..953685 (25 bp)
AAGTTTTAGCTAGCTGCTGGGTTAC
LOC_Os12g02720
Os.53587.1.S1_at--1070--8111Chr12:953602..953626 (25 bp)
GGACTGATACAGTCAGGCTTGTGAA
LOC_Os12g02720
Os.53587.1.S1_at--228--10532Chr12:953516..953540 (25 bp)
TTCTTCCCCGGATGTAATATTACAA
LOC_Os12g02720
Target Sequence 
ACATGCTCCGCGTAAGTCCAAAATTCTTCCTTCTGTACAGTAGAGACATTGAGCTCGCTGCAAGGGGATCAGAAGCTCGG
GGTCCCACCTGTCAGCGACTCAGAAGCAGTGTTCCCGCAGCAGAGTCTAGCTAGATGCAGGGCACTAAACACCCAGAAAA
GAAAAGCACAGGAATTATGACAAACTTATTAGAGTTGGTGCTGTATGCTACAATCAAGTTTTAGCTAGCTGCTGGGTTAC
TTAAGCATCATCCATGTTGATAGGAAATTAAGCAGGACTGATACAGTCAGGCTTGTGAAAGTAAAGCACAAGTAGGACAA
TACATATAGATACAGCCTAGTACAGGGGAGTTCTTTTTTTTCTTCCCCGGATGTAATATTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis