Browse Element(s) Details


Os.50992.1.S1_at

Description gb:AK059980.1
DB_XREF= gi:32969998
TID=Os.50992.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E05, full insert sequence.
FL= gb:AK059980.1 gb:AK104583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0270011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50992.1.S1_at--1082--6912Chr12:943655..943679 (25 bp)
GTATGATATGCTGCTTTGTTACGCA
LOC_Os12g02700
Os.50992.1.S1_at--1122--10252Chr12:943641..943665 (25 bp)
TTTGTTACGCAGGTGCACTGCACTA
LOC_Os12g02700
Os.50992.1.S1_at--830--7772Chr12:943630..943654 (25 bp)
GGTGCACTGCACTAGTAGTACATAG
LOC_Os12g02700
Os.50992.1.S1_at--906--6872Chr12:943601..943625 (25 bp)
GTATTATATTCTACACGGGCGGCAC
LOC_Os12g02700
Os.50992.1.S1_at--877--6712Chr12:943572..943596 (25 bp)
GTTCGTTACAGATAGTATCAGATCA
LOC_Os12g02700
Os.50992.1.S1_at--604--5212Chr12:943546..943570 (25 bp)
GAATTCAGGATTCAGTGCTACGATT
LOC_Os12g02700
Os.50992.1.S1_at--80--6572Chr12:943538..943562 (25 bp)
GATTCAGTGCTACGATTTTCTTCAA
LOC_Os12g02700
Os.50992.1.S1_at--674--10312Chr12:943522..943546 (25 bp)
TTTCTTCAATATTTCTTACTGCGTG
LOC_Os12g02700
Os.50992.1.S1_at--657--192Chr12:943512..943536 (25 bp)
ATTTCTTACTGCGTGTTGGGATTGA
LOC_Os12g02700
Os.50992.1.S1_at--432--3832Chr12:943504..943528 (25 bp)
CTGCGTGTTGGGATTGATTTGATTC
LOC_Os12g02700
Os.50992.1.S1_at--719--2172Chr12:943470..943494 (25 bp)
ACACGGTGTCAGTTTGGATATATAT
LOC_Os12g02700
Target Sequence 
GTATGATATGCTGCTTTGTTACGCAGGTGCACTGCACTAGTAGTACATAGTAGAGTATTATATTCTACACGGGCGGCACA
TTAGTTCGTTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGCTACGATTTTCTTCAATATTTCTTACTGCGTGTT
GGGATTGATTTGATTCATGTATATAACACGGTGTCAGTTTGGATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis