Browse Element(s) Details


Os.40337.1.S1_s_at

Description gb:AU162346
DB_XREF= gi:11025745
DB_XREF=AU162346
CLONE=E61353
TID=Os.40337.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40337 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_200632.1 (A.thaliana) bis
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0276010/11HIT domain containing protein
LOC_Os12g027305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02720Os.27569.3.S1_at4/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_x_at1/1111+881111..884565expressed protein
LOC_Os11g02720Os.11988.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02730Os.51048.1.S1_at11/1111+885243..886579Harpin-induced protein 1 containing protein, expressed
LOC_Os11g02740Os.54077.1.S1_at6/1111+888337..891231expressed protein
LOC_Os11g02750NANA11+895207..896154eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os11g02760Os.40337.1.S1_at11/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.40337.1.S1_s_at10/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.17056.1.A1_at3/1111+904843..909139HIT domain containing protein
LOC_Os11g02770OsAffx.30786.1.S1_at11/1111+910478..911491hypothetical protein
LOC_Os11g02780OsAffx.22848.4.S1_at2/1111+920120..926078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02780OsAffx.22848.4.S1_x_at1/1111+920120..926078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02790NANA11+927194..927598transposon protein, putative, unclassified
LOC_Os11g02800Os.54328.1.S1_at2/1111+930358..931988hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0047710molecular_functionbis(5'-adenosyl)-triphosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40337.1.S1_s_at--75--4672Chr12:963729..963753 (25 bp)
GCGGCTTACAAGTTCGGGCCGTACA
NONE
Os.40337.1.S1_s_at--480--4291NONE
CCTCCCTGGTCATGTTCTAGTGTGC
NONE
Os.40337.1.S1_s_at--1011--8592Chr12:965048..965067 (20 bp)
TGGTCATGTTCTAGTGTGCCCCAAG
NONE
Os.40337.1.S1_s_at--914--9612Chr12:965048..965070 (23 bp)
TCATGTTCTAGTGTGCCCCAAGCGT
NONE
Os.40337.1.S1_s_at--799--9532Chr12:965052..965076 (25 bp)
TCTAGTGTGCCCCAAGCGTGAAGTG
NONE
Os.40337.1.S1_s_at--326--1112Chr12:965055..965079 (25 bp)
AGTGTGCCCCAAGCGTGAAGTGAAA
NONE
Os.40337.1.S1_s_at--534--4532Chr12:965060..965084 (25 bp)
GCCCCAAGCGTGAAGTGAAACGATT
LOC_Os12g02730
Os.40337.1.S1_s_at--141--5553Chr12:965076..965100 (25 bp)
GAAACGATTTGCTGATCTAAGTTCT
LOC_Os12g02730
Os.40337.1.S1_s_at--1098--6512Chr12:965081..965105 (25 bp)
GATTTGCTGATCTAAGTTCTAATGA
LOC_Os12g02730
Os.40337.1.S1_s_at--589--7352Chr12:965111..965135 (25 bp)
GTGACTTATGGGTTACCGCAAAGGA
LOC_Os12g02730
Os.40337.1.S1_s_at--456--6512Chr12:965565..965680 (25 bp)
GATATATGATGCGATTGATGTCAAA
LOC_Os12g02730
Target Sequence 
GCGGCTTACAAGTTCGGGCCGTACAAGATCGACGCGAGGGAGGTGTTCCACTCCACGCCGCTGTCCTACGCCATGGTCAA
CCTCCGCCCACNCCTCCCTGGTCATGTTCTAGTGTGCCCCAAGCGTGAAGTGAAACGATTTGCTGATCTAAGTTCTAATG
AGATTAGTGACTTATGGGTTACCGCAAAGGAAGTTGGTATACGGCTTGAACAGTACCACAAAGCGTCTTCACTTNACATT
TGCTATTCAGGNATGGTCCACAAGCTGGTCAAACTGTTCCACATGTCCACATCCATGTCATCCCTNNNAAAGAAAGGAGA
TTTTGAGAAAAATGATGAGATATATGATGCGATTGATGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40337.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis