Browse Element(s) Details


Os.51048.1.S1_at

Description gb:AK060359.1
DB_XREF= gi:32970377
TID=Os.51048.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H05, full insert sequence.
FL= gb:AK060359.1 gb:AK101778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0273011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g02710Os.47955.2.S1_x_at6/1111+875097..878084Cytochrome P450 family protein
LOC_Os11g02720Os.27569.3.S1_at4/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_x_at1/1111+881111..884565expressed protein
LOC_Os11g02720Os.11988.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02730Os.51048.1.S1_at11/1111+885243..886579Harpin-induced protein 1 containing protein, expressed
LOC_Os11g02740Os.54077.1.S1_at6/1111+888337..891231expressed protein
LOC_Os11g02750NANA11+895207..896154eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os11g02760Os.40337.1.S1_at11/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.40337.1.S1_s_at10/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.17056.1.A1_at3/1111+904843..909139HIT domain containing protein
LOC_Os11g02770OsAffx.30786.1.S1_at11/1111+910478..911491hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51048.1.S1_at--26--8771Chr11:885582..885606 (25 bp)
TGTTTTGTTTACACCACGCAACTGC
LOC_Os11g02730
Os.51048.1.S1_at--66--2171Chr11:885572..885596 (25 bp)
ACACCACGCAACTGCTACTAGAAGT
LOC_Os11g02730
Os.51048.1.S1_at--150--10471Chr11:885537..885561 (25 bp)
TTACTATATTCTACACGGGTGGCAC
LOC_Os11g02730
Os.51048.1.S1_at--596--5691Chr11:885464..885488 (25 bp)
GACTTCCGATTTTCTTCAGTATTTC
LOC_Os11g02730
Os.51048.1.S1_at--270--9591Chr11:885441..885465 (25 bp)
TCTTGATGGGTGTTGGGATTGATTC
LOC_Os11g02730
Os.51048.1.S1_at--202--111Chr11:885354..885378 (25 bp)
ATTCTCATGTTTACTAGCTACTAAT
LOC_Os11g02730
Os.51048.1.S1_at--1141--1491Chr11:885339..885363 (25 bp)
AGCTACTAATCCAAAAATTCCTAAT
LOC_Os11g02730
Os.51048.1.S1_at--883--3151Chr11:885324..885348 (25 bp)
AATTCCTAATCCAAAGCACCAAACT
LOC_Os11g02730
Os.51048.1.S1_at--449--9811Chr11:885293..885317 (25 bp)
TAACTTTAACAGACCTTTCTCCACA
LOC_Os11g02730
Os.51048.1.S1_at--1123--10471Chr11:885288..885312 (25 bp)
TTAACAGACCTTTCTCCACAGCATG
LOC_Os11g02730
Os.51048.1.S1_at--774--4691Chr11:885257..885281 (25 bp)
GCGGCAAACTGCCAGCACACACAAA
LOC_Os11g02730
Target Sequence 
TGTTTTGTTTACACCACGCAACTGCTACTAGAAGTACATAGAGTATTACTATATTCTACACGGGTGGCACATTAGTTCGT
TATTACAGATAGTATAAGATCAGGAATTCAGGATTCAGGACTTCCGATTTTCTTCAGTATTTCTTGATGGGTGTTGGGAT
TGATTCGATTCATGTATATAACACGGTGTGTCAGTTTTGACATATACGTACATATACAGTATTTCACNATTCTCATGTTT
ACTAGCTACTAATCCAAAAATTCCTAATCCAAAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGC
CCACAGCGGCAAACTGCCAGCACACACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis