Browse Element(s) Details


OsAffx.20484.1.S1_at

Description gb:NM_195908.1
DB_XREF= gi:37533175
TID=OsAffx.20484.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g027201/11expressed protein
LOC_Os03g246101/11Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os04g332301/11hypothetical protein
LOC_Os02g503401/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g02710Os.47955.2.S1_x_at6/1111+875097..878084Cytochrome P450 family protein
LOC_Os11g02720Os.27569.3.S1_at4/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_x_at1/1111+881111..884565expressed protein
LOC_Os11g02720Os.11988.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02730Os.51048.1.S1_at11/1111+885243..886579Harpin-induced protein 1 containing protein, expressed
LOC_Os11g02740Os.54077.1.S1_at6/1111+888337..891231expressed protein
LOC_Os11g02750NANA11+895207..896154eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os11g02760Os.40337.1.S1_at11/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.40337.1.S1_s_at10/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.17056.1.A1_at3/1111+904843..909139HIT domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20484.1.S1_at--364--4311Chr10:10088368..10088392 (25 bp)
GCCTCGCACCGAAAGCCGTTGGACG
NONE
OsAffx.20484.1.S1_at--1002--2351Chr10:10088379..10088403 (25 bp)
AAAGCCGTTGGACGCGAGCACAGCA
NONE
OsAffx.20484.1.S1_at--594--6611Chr10:10088385..10088409 (25 bp)
GTTGGACGCGAGCACAGCACCACCA
NONE
OsAffx.20484.1.S1_at--521--511Chr10:10088436..10088460 (25 bp)
ATCGTCGTCCTAGCACAGCTCAGCC
NONE
OsAffx.20484.1.S1_at--919--9652Chr10:10088469..10088702 (25 bp)
TCAGCTACGACGACGCACACCGAAA
NONE
OsAffx.20484.1.S1_at--36--9952Chr10:10088474..10088707 (25 bp)
TACGACGACGCACACCGAAATCAGA
NONE
OsAffx.20484.1.S1_at--298--4092Chr10:10088476..10088709 (25 bp)
CGACGACGCACACCGAAATCAGAGA
NONE
OsAffx.20484.1.S1_at--113--1871Chr10:10088798..10088822 (25 bp)
ACGACGCCGAGCCTAAGCTGATAGG
NONE
OsAffx.20484.1.S1_at--153--41726Chr12:3394476..3394495 (20 bp)
CGCCGAGCCTAAGCTGATAGGGAAA
NONE
OsAffx.20484.1.S1_at--506--4191Chr10:10088861..10089186 (25 bp)
CCCTCACGTGGATGCGGCGCGAGAT
NONE
OsAffx.20484.1.S1_at--648--4071Chr10:10089181..10089205 (25 bp)
CGAGATGGGTGTGGATGCGGCGCCG
NONE
Target Sequence 
GCCTCGCACCGAAAGCCGTTGGACGCGAGCACAGCACCACCACTGGTGCCAACAGCAATGCCGCTGCCATCGTCGTCCTA
GCACAGCTCAGCCTCATGCCCTCAGCTACGACGACGCACACCGAAATCAGAGAAAGGGGAAGAGGTGGGACCTGGACGGG
GAGGGCGTCCATGTCAGCGCGGAGCGCAACGATGGGGGGAAGGCCGGAGCGGACGTCGGCGACGACGCCGAGCCTAAGCT
GATAGGGAAAGGCGGGCAATTCACTTTATACACTCCAACACTCCCCCTCACGTGGATGCGGCGCGAGATGGGTGTGGATG
CGGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis