Browse Element(s) Details


Os.17056.1.A1_at

Description gb:AK119337.1
DB_XREF= gi:37988960
TID=Os.17056.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D01, full insert sequence.
FL= gb:AK119337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0273011/11expressed protein
LOC_Os11g027603/11HIT domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified
LOC_Os12g02780NANA12+979692..981314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02790NANA12+985410..986157expressed protein
LOC_Os12g02800Os.52568.1.S1_s_at11/1112+987599..988874expressed protein
LOC_Os12g02800Os.52568.1.S1_at11/1112+987599..988874expressed protein
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0047710molecular_functionbis(5'-adenosyl)-triphosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17056.1.A1_at--655--8932Chr12:967932..967956 (25 bp)
TGACCGGTCTGGACATCACGCCGGC
LOC_Os12g02730
Os.17056.1.A1_at--247--7972Chr12:968001..968025 (25 bp)
GGATCTTGCAGCTCCTCATGGAGAA
LOC_Os12g02730
Os.17056.1.A1_at--399--5692Chr12:968152..968176 (25 bp)
GACTTGCTGCTGTGACACTGAAGGA
LOC_Os12g02730
Os.17056.1.A1_at--695--5971Chr12:968175..968199 (25 bp)
GAGAACTTGTGCTGTCCAAGCCTTC
LOC_Os12g02730
Os.17056.1.A1_at--955--7312Chr12:968208..968232 (25 bp)
GTGCTCTGTAACAGTTCCATCGATT
LOC_Os12g02730
Os.17056.1.A1_at--386--6692Chr12:968221..968245 (25 bp)
GTTCCATCGATTGTGCAGGCTGAGA
LOC_Os12g02730
Os.17056.1.A1_at--439--5012Chr12:968235..968259 (25 bp)
GCAGGCTGAGAATCTGTCACATTAG
LOC_Os12g02730
Os.17056.1.A1_at--53--9951Chr12:968284..968308 (25 bp)
TACGCTGATTATCTGTTTTTTACAT
LOC_Os12g02730
Os.17056.1.A1_at--88--6672Chr12:968340..968364 (25 bp)
GTTGACAACGAATCATGCAGATCAT
LOC_Os12g02730
Os.17056.1.A1_at--1138--5032Chr12:968356..968380 (25 bp)
GCAGATCATGTTTCTTTTATTACTT
LOC_Os12g02730
Os.17056.1.A1_at--721--10213Chr12:968373..968397 (25 bp)
TATTACTTCTTTGTCACTTAACTGA
LOC_Os12g02730
Target Sequence 
TGACCGGTCTGGACATCACGCCGGCGTTCTTCCTCGTGATCCGCGCNGCCTCCTCGCCGTTGCTGCCNCGGATCTTGCAG
CTCCTCATGGAGAAGNCAGCCGTCGATTCTGAAGCTGGGGCTGGGAGAAGCATCAGGNNNTTGGCTGTCACCACTTGTTC
TTGTNGACATGAAAACTTCTGNTTCNTCGNNTGCTNCTGNNAGAGCTGAGCTCTTNCCTCATGGAGNAGACTTGCTGCTG
TGACACTGAAGGAGAACTTGTGCTGTCCAAGCCTTCTTCCTCTTGTGCTCTGTAACAGTTCCATCGATTGTGCAGGCTGA
GAATCTGTCACATTAGAGCAATGAAGATTAGTTTTTAATTTACGCTGATTATCTGTTTTTTACATTGCTTAGTTCAAAAA
TAGCGGCTGAAGAAAAGTTGACAACGAATCATGCAGATCATGTTTCTTTTATTACTTCTTTGTCACTTAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17056.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis