Browse Element(s) Details


OsAffx.7464.1.S1_at

Description tigr:9640.m00180
TID=OsAffx.7464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ATPase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g027508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified
LOC_Os12g02780NANA12+979692..981314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02790NANA12+985410..986157expressed protein
LOC_Os12g02800Os.52568.1.S1_s_at11/1112+987599..988874expressed protein
LOC_Os12g02800Os.52568.1.S1_at11/1112+987599..988874expressed protein
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7464.1.S1_at--426--10251Chr12:970303..970327 (25 bp)
TTTGGTCCGCACGAGATAGCCGAGC
NONE
OsAffx.7464.1.S1_at--512--7251Chr12:970307..970331 (25 bp)
GTCCGCACGAGATAGCCGAGCGGCA
NONE
OsAffx.7464.1.S1_at--126--3112Chr12:971463..971487 (25 bp)
AATATTGCTACTTATCAGGACGGAC
LOC_Os12g02750
OsAffx.7464.1.S1_at--265--10552Chr12:971467..971491 (25 bp)
TTGCTACTTATCAGGACGGACCTCA
LOC_Os12g02750
OsAffx.7464.1.S1_at--305--2431Chr12:971672..971696 (25 bp)
AAAACGAGACATTAGACCTGGATAT
LOC_Os12g02750
OsAffx.7464.1.S1_at--194--5991Chr12:971677..971701 (25 bp)
GAGACATTAGACCTGGATATTGAAA
LOC_Os12g02750
OsAffx.7464.1.S1_at--525--4552Chr12:971728..971752 (25 bp)
GCCCAAGAAGCCAAAGAATATCGTG
LOC_Os12g02750
OsAffx.7464.1.S1_at--188--2732Chr12:971741..971765 (25 bp)
AAGAATATCGTGCTCTTTTCTCCTA
LOC_Os12g02750
OsAffx.7464.1.S1_at--599--3112Chr12:971744..971768 (25 bp)
AATATCGTGCTCTTTTCTCCTAGAA
LOC_Os12g02750
OsAffx.7464.1.S1_at--473--10152Chr12:971746..971770 (25 bp)
TATCGTGCTCTTTTCTCCTAGAAAA
LOC_Os12g02750
OsAffx.7464.1.S1_at--918--5511NONE
GAAAATGTCTATTATATTGTCAATA
NONE
Target Sequence 
TTTGGTCCGCACGAGATAGCCGAGCGGCAGGTGTTCCGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCAC
CCGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTC
GTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATT
CAGTTGAATAAATATTGCTACTTATCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCGTTC
CCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGAT
ATTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTC
TATTATATTGTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis