Browse Element(s) Details


OsAffx.18640.1.S1_at

Description tigr:9639.m00174
TID=OsAffx.18640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g02710Os.47955.2.S1_x_at6/1111+875097..878084Cytochrome P450 family protein
LOC_Os11g02720Os.27569.3.S1_at4/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_x_at1/1111+881111..884565expressed protein
LOC_Os11g02720Os.11988.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02730Os.51048.1.S1_at11/1111+885243..886579Harpin-induced protein 1 containing protein, expressed
LOC_Os11g02740Os.54077.1.S1_at6/1111+888337..891231expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18640.1.S1_at--168--8811Chr11:867134..867467 (25 bp)
TTTCCGGTGCCAACGGGATTCGACG
LOC_Os11g02690
OsAffx.18640.1.S1_at--584--1911Chr11:867122..867146 (25 bp)
ACGGGATTCGACGTGGGCCAACTCT
LOC_Os11g02690
OsAffx.18640.1.S1_at--827--1891Chr11:867112..867136 (25 bp)
ACGTGGGCCAACTCTGGTGATTGGA
LOC_Os11g02690
OsAffx.18640.1.S1_at--226--4651Chr11:867045..867069 (25 bp)
GCGTAGCTTGGCTGAACACAGGATG
LOC_Os11g02690
OsAffx.18640.1.S1_at--494--2471Chr11:867031..867055 (25 bp)
AACACAGGATGCACGCAGGCGCTGA
LOC_Os11g02690
OsAffx.18640.1.S1_at--911--3791Chr11:866972..866996 (25 bp)
CTCGCGTGGGCCTCAAGTGCTGGAT
LOC_Os11g02690
OsAffx.18640.1.S1_at--927--3191Chr11:866959..866983 (25 bp)
CAAGTGCTGGATGCGTTGGCAACCG
LOC_Os11g02690
OsAffx.18640.1.S1_at--1015--7571Chr11:866638..866662 (25 bp)
GGGCTCAGACGATAGCGCAACAGAC
LOC_Os11g02690
OsAffx.18640.1.S1_at--624--1651Chr11:866625..866649 (25 bp)
AGCGCAACAGACGACAAGACTACAT
LOC_Os11g02690
OsAffx.18640.1.S1_at--414--3231Chr11:866611..866635 (25 bp)
CAAGACTACATGGTGAAGAGGTGCT
LOC_Os11g02690
OsAffx.18640.1.S1_at--508--951Chr11:866547..866571 (25 bp)
AGGAAATCAAGGGTGCGTGTGCAAA
LOC_Os11g02690
Target Sequence 
TTTCCGGTGCCAACGGGATTCGACGTGGGCCAACTCTGGTGATTGGAGGTGGCGGTTTTTGCGAGGAGCCAAGGTGTGCG
TCGGCGGCGGCGTAGCTTGGCTGAACACAGGATGCACGCAGGCGCTGAGGCAGGACGCGAGGCGGCATGGAGGCCGCGGC
AACTCGCGTGGGCCTCAAGTGCTGGATGCGTTGGCAACCGTGAGGACACGGTTGTGGACCGAAGGGGCTCAGACGATAGC
GCAACAGACGACAAGACTACATGGTGAAGAGGTGCTGACGCGGTTAAGTGGGAAGCTCGAGGAGAAGAGGAAGACAGGAA
ATCAAGGGTGCGTGTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis