Browse Element(s) Details


Os.10542.2.S1_at

Description gb:AK063302.1
DB_XREF= gi:32973320
TID=Os.10542.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F04, full insert sequence.
FL= gb:AK063302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02560OsAffx.31554.1.S1_at9/1112+880780..882971hypothetical protein
LOC_Os12g02560OsAffx.31656.2.S1_at3/1112+880780..882971hypothetical protein
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10542.2.S1_at--547--391Chr12:906406..906430 (25 bp)
ATCACGCTATGTTCCTCTATGGAGG
LOC_Os12g02660
Os.10542.2.S1_at--61--6151Chr12:906385..906409 (25 bp)
GAGGTATCTGAATCTCCACCATAGT
LOC_Os12g02660
Os.10542.2.S1_at--6--371Chr12:906314..906338 (25 bp)
ATAATTAAGGCCATCGCTCTCATCA
LOC_Os12g02660
Os.10542.2.S1_at--948--2371Chr12:906248..906272 (25 bp)
AAACGATGCATGTTGCGGCGCGACC
LOC_Os12g02660
Os.10542.2.S1_at--913--5832Chr12:906198..906222 (25 bp)
GACCTTGTCTTCTTGCTAAGTCGAT
LOC_Os12g02660
Os.10542.2.S1_at--1013--9011Chr12:906157..906181 (25 bp)
TGCAAGAATGCGTCCTCCAGGAAAT
LOC_Os12g02660
Os.10542.2.S1_at--147--7431Chr12:906097..906121 (25 bp)
GTGTTCTGCCGATAAGTGCTGGTTA
LOC_Os12g02660
Os.10542.2.S1_at--1147--4712Chr12:906080..906104 (25 bp)
GCTGGTTATTTCATCTCTTTCATCA
LOC_Os12g02660
Os.10542.2.S1_at--727--5012Chr12:906035..906059 (25 bp)
GCAGTCCCTGCATATGGCTAAAGCT
LOC_Os12g02660
Os.10542.2.S1_at--902--491Chr12:906002..906026 (25 bp)
ATCGGTCACCTGAGCATCCAAAGTA
LOC_Os12g02660
Os.10542.2.S1_at--269--5111Chr12:905957..905981 (25 bp)
GCACTGAACATCTGGTTGGCTGGCA
LOC_Os12g02660
Target Sequence 
ATCACGCTATGTTCCTCTATGGAGGTATCTGAATCTCCACCATAGTCACCAAGACTGATGGCAGATTCAATTTCACCAAA
CACAGAATCAACATAATTAAGGCCATCGCTCTCATCATCTGAAGCATGCCATCTTTGAGATTGGCTTGGTGTTGAATTAA
ACGATGCATGTTGCGGCGCGACCGACGAAGAATCAATATCCGTTTCACGACCTTGTCTTCTTGCTAAGTCGATCAGCTGA
GAAAACTCCTGCAAGAATGCGTCCTCCAGGAAATCAATGCTTGCAGTCCTGGATATCTGCCTCCTCCGTGTGTTCTGCCG
ATAAGTGCTGGTTATTTCATCTCTTTCATCATCATTGAGTACTGTCATCTTGCAGTCCCTGCATATGGCTAAAGCTTCAA
AGGTATCGGTCACCTGAGCATCCAAAGTAAACGGCCTTGTGCAAACTAGGCACTGAACATCTGGTTGGCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10542.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis