Browse Element(s) Details


Os.10614.1.S1_at

Description gb:AK070461.1
DB_XREF= gi:32980485
TID=Os.10614.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A04, full insert sequence.
FL= gb:AK070461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32660OsAffx.28717.1.S1_at10/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32660OsAffx.18522.1.S1_at1/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32670Os.10614.1.S1_at11/117+19499139..19503463expressed protein
LOC_Os07g32680NANA7+19513254..19514608transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g32690Os.2235.3.S1_x_at10/117+19517780..19524609retrotransposon protein, putative, unclassified
LOC_Os07g32690Os.52007.1.S1_at1/117+19517780..19524609retrotransposon protein, putative, unclassified
LOC_Os07g32700NANA7+19527778..19528668transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10614.1.S1_at--1032--6551Chr07:19502815..19502839 (25 bp)
GATTACATACTCAGCATTTACCAAG
LOC_Os07g32670
Os.10614.1.S1_at--1160--8171Chr07:19502971..19502995 (25 bp)
GGAAGCCATAGTAACTCACCCTGAA
LOC_Os07g32670
Os.10614.1.S1_at--76--7051Chr07:19502981..19503005 (25 bp)
GTAACTCACCCTGAAGAAACTCTTC
LOC_Os07g32670
Os.10614.1.S1_at--882--8511Chr07:19503012..19503036 (25 bp)
TGGAGGCACCTGATGAAAAGTCCCC
LOC_Os07g32670
Os.10614.1.S1_at--933--2411Chr07:19503048..19503072 (25 bp)
AAAACCGGTTCAAGATCAAGCTCAA
LOC_Os07g32670
Os.10614.1.S1_at--1135--571Chr07:19503093..19503117 (25 bp)
ATCCACTGTGGAAGCGTGCACCAAA
LOC_Os07g32670
Os.10614.1.S1_at--740--1451Chr07:19503201..19503225 (25 bp)
AGAAGGTTTCCATATTCTCCAAGAA
LOC_Os07g32670
Os.10614.1.S1_at--772--4531Chr07:19503275..19503299 (25 bp)
GCCCCTGGACCATTCGATGATAGTG
LOC_Os07g32670
Os.10614.1.S1_at--487--7031Chr07:19503341..19503365 (25 bp)
GTACAATTTGTAGAGTGGTGCCACA
LOC_Os07g32670
Os.10614.1.S1_at--594--6271Chr07:19503367..19503391 (25 bp)
GATGTCGGGAATAAGCTCAAGCTGT
LOC_Os07g32670
Os.10614.1.S1_at--896--1611Chr07:19503386..19503410 (25 bp)
AGCTGTAAATACTCCATCCAATTCA
LOC_Os07g32670
Target Sequence 
GATTACATACTCAGCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGGTCTACGAGACGATGGA
AGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACC
GGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAAATCA
TCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCAT
ATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATG
ATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCG
GGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis