Browse Element(s) Details


Os.10674.1.S1_at

Description gb:AK066313.1
DB_XREF= gi:32976331
TID=Os.10674.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065E23, full insert sequence.
FL= gb:AK066313.1 gb:AK066352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2490011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10674.1.S1_at--778--7351Chr03:14166420..14166444 (25 bp)
GTGAAGTGCGCAAATCGCCACCAAG
LOC_Os03g24900
Os.10674.1.S1_at--152--2951Chr03:14166452..14166476 (25 bp)
AAGGCGTTTTTCTCTAGATCACATA
LOC_Os03g24900
Os.10674.1.S1_at--321--10051Chr03:14166466..14166490 (25 bp)
TAGATCACATACTGAGGCCGATGAA
LOC_Os03g24900
Os.10674.1.S1_at--800--771Chr03:14166536..14166560 (25 bp)
ATGTGCGAGGTGTTTGTCCCTTTGT
LOC_Os03g24900
Os.10674.1.S1_at--399--8711Chr03:14166550..14166574 (25 bp)
TGTCCCTTTGTCAGAACGGCAGTCA
LOC_Os03g24900
Os.10674.1.S1_at--903--1931Chr03:14166565..14166589 (25 bp)
ACGGCAGTCATTTTCCCGCAAGAAA
LOC_Os03g24900
Os.10674.1.S1_at--269--3371Chr03:14166621..14166645 (25 bp)
CACCTGTTGTATCACTTCTATGCTG
LOC_Os03g24900
Os.10674.1.S1_at--200--3311Chr03:14166633..14166657 (25 bp)
CACTTCTATGCTGTAAATCCTTGTA
LOC_Os03g24900
Os.10674.1.S1_at--532--10531Chr03:14166755..14166779 (25 bp)
TTCAGATCTGCCCAAGTTGCTTTTG
LOC_Os03g24900
Os.10674.1.S1_at--1079--2031Chr03:14166882..14166906 (25 bp)
ACATTGTCTTGGTTATTTCTTTACT
LOC_Os03g24900
Os.10674.1.S1_at--927--9231Chr03:14166913..14166937 (25 bp)
TCCATGCTGGGATTTTTGTCTTAAT
LOC_Os03g24900
Target Sequence 
GTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTG
AAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTC
CCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGCTTTNGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAG
AATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGAC
CCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTNTCCTGGAATAGTAGGTTTGAACAACAGTAT
ACTACCNAAGAGTTGATAACTTACTTGATAGAATCTGNTTGACAGCNATATGNGGAATNGAGAANTGTNACATTGTCTTG
GTTATTTCTTTACTTTATGATCCATGCTGGGATTTTTGTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis