Browse Element(s) Details


Os.24794.1.S1_x_at

Description gb:AK062124.1
DB_XREF= gi:32972142
TID=Os.24794.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D05, full insert sequence.
FL= gb:AK062124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2486010/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24810OsAffx.25212.1.S1_at10/113+14115212..14116386hypothetical protein
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24794.1.S1_x_at--927--8171NONE
GGAAGAAGAGCCCTTCTACTGGTCT
NONE
Os.24794.1.S1_x_at--825--8651Chr03:14134008..14134032 (25 bp)
TGGGCTGCTTTCTGACTGGATTATC
LOC_Os03g24860
Os.24794.1.S1_x_at--800--6111Chr03:14133627..14133651 (25 bp)
GAGTGTATGCACAACTGGTTCCAAC
LOC_Os03g24860
Os.24794.1.S1_x_at--797--10671Chr03:14133609..14133633 (25 bp)
TTCCAACATTGGCTCTTTATGGCAT
LOC_Os03g24860
Os.24794.1.S1_x_at--335--8291Chr03:14133402..14133613 (25 bp)
GGCATATCGGTATATTACGCTGCAT
LOC_Os03g24860
Os.24794.1.S1_x_at--902--791Chr03:14133366..14133390 (25 bp)
ATGGGACCTGTTCCTTGGGTTATCA
LOC_Os03g24860
Os.24794.1.S1_x_at--167--6791Chr03:14133177..14133201 (25 bp)
GTTAGCTGGATTGGTTCCTTCGCAA
LOC_Os03g24860
Os.24794.1.S1_x_at--233--211Chr03:14133153..14133177 (25 bp)
ATTTCCTACTCATTCAATTTCCTCA
LOC_Os03g24860
Os.24794.1.S1_x_at--19--31Chr03:14132907..14133149 (25 bp)
ATTGGAACTCTGCAGGTACCTTCTT
LOC_Os03g24860
Os.24794.1.S1_x_at--744--5251Chr03:14132794..14132818 (25 bp)
GAATCGTTCACATGACAGCTCGAGG
LOC_Os03g24860
Os.24794.1.S1_x_at--1016--1831Chr03:14132753..14132777 (25 bp)
ACGCTCGTTATCCTCTCAAATTATT
LOC_Os03g24860
Target Sequence 
GGAAGAAGAGCCCTTCTACTGGTCTNTGCGTNTGGAACATTTNTGGGCTGCTTTCTGACTGGATTATCGTTNTACTTCAA
GGCNCAAGGAGTGTATGCACAACTGGTTCCAACATTGGCTCTTTATGGCATATCGGTATATTACGCTGCATACTCAGTTG
GAATGGGACCTGTTCCTTGGGTTATCATGTCTGAGATATTCTCCATTGAAATAAAAGCAATAGCTGGAAGCTTGGTGACN
CTGGTTAGCTGGATTGGTTCCTTCGCAATTTCCTACTCATTCAATTTCCTCATGGATTGGAACTCTGCAGGTACCTTCTT
TCTGTTCTNTGCGGCGAGCTTGGTCACGGTGTTGTTCGTGGCAAGGNTTAGTGCCAGAAACTAAAGGGAAGGCNCTCGAA
GAGATCCAAGAATCGTTCACATGACAGCTCGAGGAGGATTTGTATGTAGAACGCTCGTTATCCTCTCAAATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24794.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis