Browse Element(s) Details


Os.18653.1.S1_at

Description gb:AK099518.1
DB_XREF= gi:32984727
TID=Os.18653.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030E03, full insert sequence.
FL= gb:AK099518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2484411/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24790NANA3+14105468..14107108transposon protein, putative, unclassified
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24810OsAffx.25212.1.S1_at10/113+14115212..14116386hypothetical protein
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18653.1.S1_at--214--6851Chr03:14131978..14132002 (25 bp)
GTTTCCTGCTGTTTGATGTGCATCA
LOC_Os03g24844
Os.18653.1.S1_at--32--771Chr03:14131993..14132017 (25 bp)
ATGTGCATCAGTGCCTCAAATGGTT
LOC_Os03g24844
Os.18653.1.S1_at--715--1911Chr03:14132020..14132044 (25 bp)
ACGTGGAACACGCACCGAGATGTTG
LOC_Os03g24844
Os.18653.1.S1_at--101--7651Chr03:14132046..14132070 (25 bp)
GGGAGTTTTACCTGAGATGTTGCTA
LOC_Os03g24844
Os.18653.1.S1_at--52--6291Chr03:14132061..14132085 (25 bp)
GATGTTGCTATCACGGTTCGGAGGA
LOC_Os03g24844
Os.18653.1.S1_at--396--931Chr03:14132112..14132136 (25 bp)
AGGCAGTCGGATATGCTCAAGTTTA
LOC_Os03g24844
Os.18653.1.S1_at--94--6791Chr03:14132217..14132241 (25 bp)
GTTAGCTTGGTTTGAATGCCTTCAT
LOC_Os03g24844
Os.18653.1.S1_at--417--5272Chr05:15816816..15817113 (25 bp)
GAATGCCTTCATCCAATTCTGATGA
NONE
Os.18653.1.S1_at--838--6471Chr03:14132253..14132277 (25 bp)
GATACTGACCTAGCTAATCTCACTC
LOC_Os03g24844
Os.18653.1.S1_at--574--3591Chr03:14132315..14132339 (25 bp)
CATTCACGATTTGGTTTTGGTCTTT
LOC_Os03g24844
Os.18653.1.S1_at--170--2171Chr03:14132385..14132409 (25 bp)
ACACTTGCAATATGTTCCCTGTATT
LOC_Os03g24844
Target Sequence 
GTTTCCTGCTGTTTGATGTGCATCAGTGCCTCAAATGGTTAAACGTGGAACACGCACCGAGATGTTGAGGGAGTTTTACC
TGAGATGTTGCTATCACGGTTCGGAGGAAATGAATTGACACTTGCAAGTTAAGAAGGCAGTCGGATATGCTCAAGTTTAT
AAGCTTGTTGAGTGAGGGTTGGTGGTATTATTTTTTCCCCGTTATTGTTAACAATTGTTTGCTAAAGCATAGAGCAATAG
TTAGCTTGGTTTGAATGCCTTCATCCAATTCTGATGATACTGACCTAGCTAATCTCACTCAGATTTGATTCTGAATGATT
AAATCCCAACCTAATCCCATTCACGATTTGGTTTTGGTCTTTTGAGGTGATAAAATATGTTCCCTGTATTTTTTTCCCTT
TCCTATTACACTTGCAATATGTTCCCTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis