Browse Element(s) Details


Os.46762.1.S1_at

Description gb:AK120364.1
DB_XREF= gi:37989987
TID=Os.46762.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068O19, full insert sequence.
FL= gb:AK120364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2473011/11expressed protein
LOC_Os03g248202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24690OsAffx.3313.1.S1_at11/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690OsAffx.25211.1.S1_x_at2/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690Os.50229.1.S1_at1/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24699NANA3+14056781..14056894NA
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein
LOC_Os03g24740OsAffx.3314.1.S1_at11/113+14078892..14079206hypothetical protein
LOC_Os03g24750NANA3+14081180..14081383hypothetical protein
LOC_Os03g24760OsAffx.25211.1.S1_x_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24760OsAffx.25211.1.S1_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46762.1.S1_at--49--8371Chr03:14076167..14076191 (25 bp)
GGCGGTTCATCGTGCAGCAGGTCAT
LOC_Os03g24730
Os.46762.1.S1_at--909--2532Chr03:14076250..14076274 (25 bp)
AACTACGTATCGCTTCTCCGGGAGG
LOC_Os03g24730
Os.46762.1.S1_at--651--2692Chr03:14076364..14076388 (25 bp)
AAGCACCGGGAGAGCTTCTCGGCTG
LOC_Os03g24730
Os.46762.1.S1_at--129--2251Chr03:14076450..14076474 (25 bp)
AAATTGCCCGGGATCTGCTGTCTTT
LOC_Os03g24730
Os.46762.1.S1_at--1157--9112Chr03:14076465..14076489 (25 bp)
TGCTGTCTTTATTCCTGCACTAACA
LOC_Os03g24730
Os.46762.1.S1_at--1069--9811Chr03:14076485..14076509 (25 bp)
TAACACAGATCCTTTTTCTTCTTGT
LOC_Os03g24730
Os.46762.1.S1_at--519--10391Chr03:14076551..14076575 (25 bp)
TTATCCTAAACGTGATGCCTCTCGT
LOC_Os03g24730
Os.46762.1.S1_at--79--7751Chr03:14076577..14076601 (25 bp)
GGTGATTCAGTTCATAATTTTGTAC
LOC_Os03g24730
Os.46762.1.S1_at--860--5411Chr03:14076607..14076631 (25 bp)
GAACCAATGAACGACAGCAGCTGAG
LOC_Os03g24730
Os.46762.1.S1_at--856--5931Chr03:14076629..14076653 (25 bp)
GAGCAGCAAGTACACTGGTCTGACC
LOC_Os03g24730
Os.46762.1.S1_at--469--2991Chr03:14076684..14076708 (25 bp)
AATGTACTACCTCAATTTGTTACAG
LOC_Os03g24730
Target Sequence 
GGCGGTTCATCGTGCAGCAGGTCATCTGGCTCATGACCTCGTCCTCCTCCGCCGGTGGCGGCGGCGGCGGCGGCGGCGGC
GCGAACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGA
GTGCTACCACGTGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCGGCTGCCGTCGACGCCGCGCTGG
AGCTGCTCGGCGGCGATGGCCGGAGCTCGAGCTGAGTGATGAGAAATTGCCCGGGATCTGCTGTCTTTATTCCTGCACTA
ACACAGATCCTTTTTCTTCTTGTTTATTTTTTTTAAAAAAATATTTTTCTTAGTAAAAGATAGCTTATCCTAAACGTGAT
GCCTCTCGTAGGTGATTCAGTTCATAATTTTGTACAGAACGAACCAATGAACGACAGCAGCTGAGCAGCAAGTACACTGG
TCTGACCTTTCACTTTTGTAGGAGTATGAACTTATACAATGTACTACCTCAATTTGTTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis