Browse Element(s) Details


OsAffx.3313.1.S1_at

Description tigr:9631.m02408
TID=OsAffx.3313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2469011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24650OsAffx.13007.1.S1_at11/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24650OsAffx.25211.1.S1_x_at1/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24680OsAffx.3312.1.S1_at11/113+14039456..14045329Terpene synthase, N-terminal domain containing protein
LOC_Os03g24690OsAffx.3313.1.S1_at11/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690OsAffx.25211.1.S1_x_at2/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690Os.50229.1.S1_at1/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24699NANA3+14056781..14056894NA
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3313.1.S1_at--429--3611Chr03:14047238..14047262 (25 bp)
CTTGGAGCCAGATGAGAAGCACCGC
LOC_Os03g24690
OsAffx.3313.1.S1_at--170--5391Chr03:14047223..14047247 (25 bp)
GAAGCACCGCATGTCTTACGTGAAA
LOC_Os03g24690
OsAffx.3313.1.S1_at--611--1791Chr03:14047218..14047242 (25 bp)
ACCGCATGTCTTACGTGAAATCTTC
LOC_Os03g24690
OsAffx.3313.1.S1_at--604--5591Chr03:14047086..14047226 (25 bp)
GAAATCTTCGTTCAAGCAGCAGTCA
LOC_Os03g24690
OsAffx.3313.1.S1_at--683--5051Chr03:14047071..14047095 (25 bp)
GCAGCAGTCAGAATACTACCTCCGT
LOC_Os03g24690
OsAffx.3313.1.S1_at--658--3551Chr03:14047001..14047025 (25 bp)
CATCTGGACGTGTCTTTCATGTCAA
LOC_Os03g24690
OsAffx.3313.1.S1_at--187--10331Chr03:14046987..14047011 (25 bp)
TTTCATGTCAATTGGCTACCCAACA
LOC_Os03g24690
OsAffx.3313.1.S1_at--970--11Chr03:14046977..14047001 (25 bp)
ATTGGCTACCCAACAATGGCTGTGG
LOC_Os03g24690
OsAffx.3313.1.S1_at--1057--7211Chr03:14046689..14046713 (25 bp)
GTCGAGATGGATCCCAACCTGCTGC
LOC_Os03g24690
OsAffx.3313.1.S1_at--250--3871Chr03:14046653..14046677 (25 bp)
CTGTTGGTGAACCTTGCGACGACAC
LOC_Os03g24690
OsAffx.3313.1.S1_at--1031--5771Chr03:14046636..14046660 (25 bp)
GACGACACCGGAGGTCATCTACTTC
LOC_Os03g24690
Target Sequence 
CTTGGAGCCAGATGAGAAGCACCGCATGTCTTACGTGAAATCTTCGTTCAAGCAGCAGTCAGAATACTACCTCCGTGAGG
CCCAATGGTCGAGCGACAAGCACATGCCCAGCTTCGCCGAGCATCTGGACGTGTCTTTCATGTCAATTGGCTACCCAACA
ATGGCTGTGGTGGTGCTATTGTGCGCACGCGACGGCGACGGTGCGGCGGCGTCCATGGAGGCATCCGAGTGGGCGCCCAG
CTTGGTCCGCGCCGGCGGCGAGGTCACCCGCTTCCTCAACGACATCGCCTCCTACAAGACCGGGAAGAGCGGCAAGGACG
CGGCGAGCACGATCGAGTGCTACATGGCGGAGCGCGGCGTGGGCGGGGAGGAGGCCGTGGCGGCGGTGGCCGCGCTGGTG
GAGAGCGCGTGGAGGACGATCAACAGGGCGTGCGTCGAGATGGATCCCAACCTGCTGCCGGCGGCGCGGCTGTTGGTGAA
CCTTGCGACGACACCGGAGGTCATCTACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis