Browse Element(s) Details


OsAffx.3312.1.S1_at

Description tigr:9631.m02407
TID=OsAffx.3312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2468011/11Terpene synthase, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24640OsAffx.13006.1.S1_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24640OsAffx.32219.1.A1_x_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24650OsAffx.13007.1.S1_at11/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24650OsAffx.25211.1.S1_x_at1/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24680OsAffx.3312.1.S1_at11/113+14039456..14045329Terpene synthase, N-terminal domain containing protein
LOC_Os03g24690OsAffx.3313.1.S1_at11/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690OsAffx.25211.1.S1_x_at2/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690Os.50229.1.S1_at1/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24699NANA3+14056781..14056894NA
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3312.1.S1_at--1030--1231Chr03:14043433..14043457 (25 bp)
AGTTGCTAAGCAACTTTGACGAGAT
LOC_Os03g24680
OsAffx.3312.1.S1_at--753--5411Chr03:14043471..14043495 (25 bp)
GAACCAAATGAGAAACACCGTGTGT
LOC_Os03g24680
OsAffx.3312.1.S1_at--63--2411Chr03:14043483..14043507 (25 bp)
AAACACCGTGTGTCTTACGCCATAA
LOC_Os03g24680
OsAffx.3312.1.S1_at--75--8671Chr03:14043491..14043512 (22 bp)
TGTGTCTTACGCCATAACTATGTAC
LOC_Os03g24680
OsAffx.3312.1.S1_at--335--2531Chr03:14044302..14044790 (25 bp)
AACTATGTACAAGCAGTTGTCTGAA
LOC_Os03g24680
OsAffx.3312.1.S1_at--263--9191Chr03:14044798..14044822 (25 bp)
TCCAGGAGGCCCGATGGTCGAGCCA
LOC_Os03g24680
OsAffx.3312.1.S1_at--617--6251Chr03:14044810..14044834 (25 bp)
GATGGTCGAGCCACAGGTACCTGCC
LOC_Os03g24680
OsAffx.3312.1.S1_at--776--7831Chr03:14044825..14044849 (25 bp)
GGTACCTGCCGAGCTTCGCGGAGCA
LOC_Os03g24680
OsAffx.3312.1.S1_at--166--8071Chr03:14044844..14044868 (25 bp)
GGAGCACCTGTACGTGTCCAGCATC
LOC_Os03g24680
OsAffx.3312.1.S1_at--735--7291Chr03:14045052..14045076 (25 bp)
GTGCGAGCCTCGTGGAGACCTACAT
LOC_Os03g24680
OsAffx.3312.1.S1_at--1027--1371Chr03:14045067..14045091 (25 bp)
AGACCTACATGACGGAGCACGGCGC
LOC_Os03g24680
Target Sequence 
AGTTGCTAAGCAACTTTGACGAGATGGAGAATAGCTTAGAACCAAATGAGAAACACCGTGTGTCTTACGCCATAACTATG
TACAAGCAGTTGTCTGAATACTACCTCCAGGAGGCCCGATGGTCGAGCCACAGGTACCTGCCGAGCTTCGCGGAGCACCT
GTACGTGTCCAGCATCTCGTCGGGCATCCCGGCGCTGGCACCGGCGGTGCTGATGGGCGTGCACGACGGTGACGGCGTGG
CGACCAAGGAGGCGTTGGAGTGGGCGTGCGCCATCCCGGACCTGCTCCTCGCCAGCGGCGAGGAAGGACGTGCGAGCCTC
GTGGAGACCTACATGACGGAGCACGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis