Browse Element(s) Details


OsAffx.13007.1.S1_at

Description tigr:9631.m02404
TID=OsAffx.13007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2465011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g24630Os.41695.3.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.5.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.15.S1_s_at8/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.2.S1_x_at7/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.4.S1_x_at1/113+14005652..14008054hypothetical protein
LOC_Os03g24640OsAffx.13006.1.S1_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24640OsAffx.32219.1.A1_x_at11/113+14011320..14016134Terpene synthase family, metal binding domain containing protein
LOC_Os03g24650OsAffx.13007.1.S1_at11/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24650OsAffx.25211.1.S1_x_at1/113+14022041..14023650Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24680OsAffx.3312.1.S1_at11/113+14039456..14045329Terpene synthase, N-terminal domain containing protein
LOC_Os03g24690OsAffx.3313.1.S1_at11/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690OsAffx.25211.1.S1_x_at2/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690Os.50229.1.S1_at1/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13007.1.S1_at--930--3371Chr03:14022725..14022749 (25 bp)
CAGCATGTCTTACGCGAAAACTACG
LOC_Os03g24650
OsAffx.13007.1.S1_at--161--10451Chr03:14022608..14022740 (25 bp)
TTACGCGAAAACTACGTTCAAGCAG
LOC_Os03g24650
OsAffx.13007.1.S1_at--85--2531Chr03:14022599..14022731 (25 bp)
AACTACGTTCAAGCAGATGTCGGAA
LOC_Os03g24650
OsAffx.13007.1.S1_at--781--4011Chr03:14022594..14022617 (24 bp)
CGTTCAAGCAGATGTCGGAATACTA
LOC_Os03g24650
OsAffx.13007.1.S1_at--56--7231Chr03:14022523..14022547 (25 bp)
GTCGAGCACCTGGATATCTCTCTCA
LOC_Os03g24650
OsAffx.13007.1.S1_at--255--5951Chr03:14022520..14022544 (25 bp)
GAGCACCTGGATATCTCTCTCATGT
LOC_Os03g24650
OsAffx.13007.1.S1_at--574--8571Chr03:14022513..14022537 (25 bp)
TGGATATCTCTCTCATGTCGTCCGG
LOC_Os03g24650
OsAffx.13007.1.S1_at--261--251Chr03:14022510..14022534 (25 bp)
ATATCTCTCTCATGTCGTCCGGCTT
LOC_Os03g24650
OsAffx.13007.1.S1_at--899--10611Chr03:14022412..14022436 (25 bp)
TTCGAGTGGGCGACCAGCGTCCCCG
LOC_Os03g24650
OsAffx.13007.1.S1_at--285--1791Chr03:14022337..14022361 (25 bp)
ACCGCCTCCTACAGGATCGGGAAGA
LOC_Os03g24650
OsAffx.13007.1.S1_at--616--9431Chr03:14022180..14022204 (25 bp)
TCGGGACGATGGATGCCGCCCTGCT
LOC_Os03g24650
Target Sequence 
CAGCATGTCTTACGCGAAAACTACGTTCAAGCAGATGTCGGAATACTACCTCCGTGAGGCCCAATGGTCAAGCGACAAGT
ACATGCCCAGCTTCGTCGAGCACCTGGATATCTCTCTCATGTCGTCCGGCTTCCCGGCGATGGCACCGGTGCTGCTGCTC
GGCGTGCGCGACAGCGGCGGTGCGGCGGCGACAACCAAGGAGGCGTTCGAGTGGGCGACCAGCGTCCCCGTCCCCGCCCT
GGTCCGCGCCGGCGGGGAGCTCGCCCGCTTCCTCAACGACACCGCCTCCTACAGGATCGGGAAGAGCGGCGGGGACATGG
CGAGCACGGTGGAGTGCTACATGGCGGAGCGCGGCGTGGGCGGGGGGGAGGCCGTGGCGGCGGTGGCCGCGCTGGCGGAG
CGCGCGTGGAGGACGATCAACGGGGAGTGCGCCGCCGTCGGGACGATGGATGCCGCCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis