Browse Element(s) Details


Os.17424.1.S1_x_at

Description gb:BM421185
DB_XREF= gi:18387987
DB_XREF=V001E03
CLONE=V001E03
TID=Os.17424.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17424 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g247301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24690OsAffx.3313.1.S1_at11/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690OsAffx.25211.1.S1_x_at2/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24690Os.50229.1.S1_at1/113+14046555..14049916Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24699NANA3+14056781..14056894NA
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein
LOC_Os03g24740OsAffx.3314.1.S1_at11/113+14078892..14079206hypothetical protein
LOC_Os03g24750NANA3+14081180..14081383hypothetical protein
LOC_Os03g24760OsAffx.25211.1.S1_x_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24760OsAffx.25211.1.S1_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17424.1.S1_x_at--976--9471NONE
TCTGTTGTCTTGATTCCTGCACTAA
NONE
Os.17424.1.S1_x_at--674--10191NONE
TATTTTTCTCAAAGATAGCTAATCC
NONE
Os.17424.1.S1_x_at--1040--2571Chr03:14076559..14076585 (25 bp)
AACGTGATGCCTCGTAGGTGATTCA
LOC_Os03g24730
Os.17424.1.S1_x_at--890--5451NONE
GAACGATAGCGGCAAGTACACTGGA
NONE
Os.17424.1.S1_x_at--529--1871NONE
ACGATAGCGGCAAGTACACTGGACT
NONE
Os.17424.1.S1_x_at--218--6491NONE
GATAGCGGCAAGTACACTGGACTGA
NONE
Os.17424.1.S1_x_at--40--9991NONE
TAGCGGCAAGTACACTGGACTGACC
NONE
Os.17424.1.S1_x_at--116--8111NONE
GGACTGACCTTTCACTTTTGTAGGA
NONE
Os.17424.1.S1_x_at--265--731NONE
ATGTACTACGTACCTCAATTTGCTA
NONE
Os.17424.1.S1_x_at--391--7011NONE
GTACTACGTACCTCAATTTGCTACA
NONE
Os.17424.1.S1_x_at--66--2031NONE
ACTACGTACCTCAATTTGCTACAGT
NONE
Target Sequence 
TCTGTTGTCTTGATTCCTGCACTAACNCAGATCCTTTTTCATCTTTTTTTTTTAAAAAAAAATATTTTTCTCAAAGATAG
CTAATCCNAAACGTGATGCCTCGTAGGTGATTCAGNTTCATATTTTTGTACAGAACGAACCANTGAACGATAGCGGCAAG
TACACTGGACTGACCTTTCACTTTTGTAGGAGTATGAACTTATACAATGTACTACGTACCTCAATTTGCTACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17424.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis