Browse Element(s) Details


Os.8404.1.S1_s_at

Description gb:AU095758
DB_XREF= gi:8858440
DB_XREF=AU095758
CLONE=S10821
TID=Os.8404.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8404 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48448 (A.thaliana) T48448 3-oxoacyl-(acyl-carrier-protein) synthase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2483011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24790NANA3+14105468..14107108transposon protein, putative, unclassified
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24810OsAffx.25212.1.S1_at10/113+14115212..14116386hypothetical protein
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8404.1.S1_s_at--568--6231Chr03:14128579..14128603 (25 bp)
GATGGACCGAAAGCCGAGTTAGCAC
LOC_Os03g24830
Os.8404.1.S1_s_at--543--6771Chr03:14128596..14128620 (25 bp)
GTTAGCACAAGCCTCCAATGGCGAT
LOC_Os03g24830
Os.8404.1.S1_s_at--1086--4451Chr03:14128606..14128630 (25 bp)
GCCTCCAATGGCGATGACAAGACAG
LOC_Os03g24830
Os.8404.1.S1_s_at--604--671Chr03:14128619..14128643 (25 bp)
ATGACAAGACAGTCCAACAGGTGGA
LOC_Os03g24830
Os.8404.1.S1_s_at--355--6291Chr03:14128684..14128708 (25 bp)
GATGTTGAAGCAGCGGTCATTCGGA
LOC_Os03g24830
Os.8404.1.S1_s_at--225--2711Chr03:14128691..14128715 (25 bp)
AAGCAGCGGTCATTCGGACTTTCCA
LOC_Os03g24830
Os.8404.1.S1_s_at--460--1011Chr03:14128717..14128741 (25 bp)
AGTGTTGTTAGAGAGTATTTCCGGG
LOC_Os03g24830
Os.8404.1.S1_s_at--169--4171Chr03:14128756..14128780 (25 bp)
CCCTTCAATACGGAGGCGAGGAAAG
LOC_Os03g24830
Os.8404.1.S1_s_at--134--6191Chr03:14128773..14128797 (25 bp)
GAGGAAAGCCGCTGGCTTCGAGCCT
LOC_Os03g24830
Os.8404.1.S1_s_at--606--8491Chr03:14128785..14128809 (25 bp)
TGGCTTCGAGCCTGCCTGGTATGAA
LOC_Os03g24830
Os.8404.1.S1_s_at--580--4471Chr03:14128798..14128822 (25 bp)
GCCTGGTATGAACCCTTGGCAGTGA
LOC_Os03g24830
Target Sequence 
GATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCNAA
ATGCAAACTAGTCGACANTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACNAGTGTTGTTAGAGAGTATTT
CCGGGGACCCNTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGG
CAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8404.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis