Browse Element(s) Details


OsAffx.25212.1.S1_at

Description tigr:9631.m02420
TID=OsAffx.25212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2481010/11hypothetical protein
LOC_Os07g241001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24790NANA3+14105468..14107108transposon protein, putative, unclassified
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24810OsAffx.25212.1.S1_at10/113+14115212..14116386hypothetical protein
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein
LOC_Os03g24830OsAffx.25213.1.S1_at11/113+14126503..14129148expressed protein
LOC_Os03g24830Os.8404.1.S1_s_at11/113+14126503..14129148expressed protein
LOC_Os03g24844Os.18653.1.S1_at11/113+14129295..14132486Uncharacterised protein family containing protein, expressed
LOC_Os03g24860Os.24794.2.S1_at11/113+14132678..14137979Sugar transporter family protein, expressed
LOC_Os03g24860Os.24794.1.S1_x_at10/113+14132678..14137979Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25212.1.S1_at--204--8371NONE
GGCGGGCGCATCAAGAAGATTTGTC
NONE
OsAffx.25212.1.S1_at--369--7575Chr07:13665991..13666122 (24 bp)
GGGCGCATCAAGAAGATTTGTCAAC
LOC_Os07g24100
OsAffx.25212.1.S1_at--677--1454Chr04:24762474..24762498 (25 bp)
AGAAGATTTGTCAACTCCACCTAAG
NONE
OsAffx.25212.1.S1_at--12--2814Chr04:24762476..24762500 (25 bp)
AAGATTTGTCAACTCCACCTAAGAT
NONE
OsAffx.25212.1.S1_at--747--6514Chr04:24762478..24762502 (25 bp)
GATTTGTCAACTCCACCTAAGATAC
NONE
OsAffx.25212.1.S1_at--669--10213Chr04:24762480..24762504 (25 bp)
TTTGTCAACTCCACCTAAGATACGA
NONE
OsAffx.25212.1.S1_at--288--7094Chr04:24762483..24762507 (25 bp)
GTCAACTCCACCTAAGATACGAGTG
NONE
OsAffx.25212.1.S1_at--1161--9212Chr04:24762489..24762513 (25 bp)
TCCACCTAAGATACGAGTGCCGGCG
NONE
OsAffx.25212.1.S1_at--627--3372Chr04:24762491..24762515 (25 bp)
CACCTAAGATACGAGTGCCGGCGGC
NONE
OsAffx.25212.1.S1_at--172--5711Chr03:14115391..14115415 (25 bp)
GACTGCGGCACTTCCAACGGTCCAA
LOC_Os03g24810
OsAffx.25212.1.S1_at--686--1791Chr03:14115330..14115354 (25 bp)
ACCGACGACACGTGCTCATTCTCGC
LOC_Os03g24810
Target Sequence 
GGCGGGCGCATCAAGAAGATTTGTCAACTCCACCTAAGATACGAGTGCCGGCGGCTGGGGCAGCACGTGAAGCTCGTCGG
CGGCTTGCTGCGGGAGCTCGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCGGCTCCAAGGCG
CGCTGCGGCGGTGCTACGCGCTCATCAGGGCGTGCCAGGACTGCGGCACTTCCAACGGTCCAACCCTGACACCTCTCCCC
GCCGTCGCGGCGCCCATCCACCGACGACACGTGCTCATTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis