Browse Element(s) Details


Os.10725.1.S1_at

Description gb:AK106991.1
DB_XREF= gi:32992200
TID=Os.10725.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B01, full insert sequence.
FL= gb:AK106991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1251011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12490Os.54691.1.S1_x_at1/119+7150324..7154338Zinc knuckle family protein
LOC_Os09g12500OsAffx.17667.1.S1_at11/119+7165588..7170330expressed protein
LOC_Os09g12510Os.10725.1.S1_at11/119+7171525..7172592expressed protein
LOC_Os09g12520NANA9+7175508..7176211hypothetical protein
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10725.1.S1_at--483--2531Chr09:7172191..7172215 (25 bp)
AACTAGCCATCTTAATTTTGATCAA
LOC_Os09g12510
Os.10725.1.S1_at--821--6673Chr12:7272635..7272656 (22 bp)
GTTGCTATTGTTTTCTATAAACTCA
NONE
Os.10725.1.S1_at--622--951Chr09:7172386..7172410 (25 bp)
GGGAGTAACTAATACGTATACGTGT
LOC_Os09g12510
Os.10725.1.S1_at--390--6851Chr09:7172409..7172433 (25 bp)
GTATTCTTACACATGTACGTACGTA
LOC_Os09g12510
Os.10725.1.S1_at--1137--9931Chr09:7172424..7172448 (25 bp)
TACGTACGTATATATGGCAGCGGAC
LOC_Os09g12510
Os.10725.1.S1_at--728--271Chr09:7172435..7172459 (25 bp)
ATATGGCAGCGGACGGTTTCGATGA
LOC_Os09g12510
Os.10725.1.S1_at--499--5751Chr09:7172446..7172470 (25 bp)
GACGGTTTCGATGATGTGTATGTAT
LOC_Os09g12510
Os.10725.1.S1_at--151--6931Chr09:7172463..7172487 (25 bp)
GTATGTATGTTGATTGATTCCTGTC
LOC_Os09g12510
Os.10725.1.S1_at--640--9731Chr09:7172492..7172516 (25 bp)
TAATTTCTAGAGGATTAAGCCTTAG
LOC_Os09g12510
Os.10725.1.S1_at--236--2651Chr09:7172508..7172532 (25 bp)
AAGCCTTAGAAGGTGATCACGGTCG
LOC_Os09g12510
Os.10725.1.S1_at--601--6431Chr09:7172522..7172546 (25 bp)
GATCACGGTCGATGTACTTTGAATT
LOC_Os09g12510
Target Sequence 
AACTAGCCATCTTAATTTTGATCAAATTTNATGAAAAAACATAGCNAACATTTTTCATATCNAAAATATATTTACGGTTA
GATTTNAACAAAACTAATTTGATNGTTTTAGATGTTGCTATTGTTTTCTATAAACTCAATAAAAAATTTTAAAAAATTAA
TTAGGAAAAAGATCAAGCATCTTATATAATATGAAACGGAGGGAGTAACTAATACGTATACGTGTATTCTTACACATGTA
CGTACGTATATATGGCAGCGGACGGTTTCGATGATGTGTATGTATGTTGATTGATTCCTGTCAAATTAATTTCTAGAGGA
TTAAGCCTTAGAAGGTGATCACGGTCGATGTACTTTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis