Browse Element(s) Details


OsAffx.17667.1.S1_at

Description tigr:9637.m00973
TID=OsAffx.17667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1250011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12480OsAffx.17666.1.S1_at9/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.2.S1_a_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.1.S1_x_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.27541.1.A1_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12490Os.54691.1.S1_x_at1/119+7150324..7154338Zinc knuckle family protein
LOC_Os09g12500OsAffx.17667.1.S1_at11/119+7165588..7170330expressed protein
LOC_Os09g12510Os.10725.1.S1_at11/119+7171525..7172592expressed protein
LOC_Os09g12520NANA9+7175508..7176211hypothetical protein
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17667.1.S1_at--1028--1991Chr09:7169297..7169564 (25 bp)
ACTCGCCATGTCAGAGGCTTGTTCA
LOC_Os09g12500
OsAffx.17667.1.S1_at--415--4951Chr09:7169599..7169623 (25 bp)
GCATTCTTATGGCAACGTGCGATAC
LOC_Os09g12500
OsAffx.17667.1.S1_at--972--9931Chr09:7169621..7169645 (25 bp)
TACGTGGGCGAAGCTATCGACACTT
LOC_Os09g12500
OsAffx.17667.1.S1_at--852--5651Chr09:7169798..7169822 (25 bp)
GACAGGAGCCCTTTATCAATTTTGG
LOC_Os09g12500
OsAffx.17667.1.S1_at--813--2551Chr09:7169835..7169859 (25 bp)
AACTGACATGATTTTGACGGACTGA
LOC_Os09g12500
OsAffx.17667.1.S1_at--521--5751Chr09:7169850..7169873 (24 bp)
GACGGACTGACTTTTGCATCTGTAT
LOC_Os09g12500
OsAffx.17667.1.S1_at--381--5011Chr09:7170020..7170044 (25 bp)
GCAGGAGATCCAACTGGTCGGCATC
LOC_Os09g12500
OsAffx.17667.1.S1_at--1060--8551Chr09:7170054..7170078 (25 bp)
TGGATCCACATGTCCCTAGAGATGT
LOC_Os09g12500
OsAffx.17667.1.S1_at--656--6731Chr09:7170088..7170112 (25 bp)
GTTCATTCTGTATCGAAGGTCTTCT
LOC_Os09g12500
OsAffx.17667.1.S1_at--83--4991Chr09:7170167..7170191 (25 bp)
GCAGTTTTTTATATCTTTACCCAAT
LOC_Os09g12500
OsAffx.17667.1.S1_at--69--6271Chr09:7170269..7170293 (25 bp)
GATGCTTCTAATTTAGCCCGACGTG
LOC_Os09g12500
Target Sequence 
ACTCGCCATGTCAGAGGCTTGTTCAGCAGAGGTTACAATTGAGCTTTCAAGAATCAATAGCATTCTTATGGCAACGTGCG
ATACGTGGGCGAAGCTATCGACACTTGATGAAAGAAGTCGGCTACAAGTAGAGATTTCAATGGAGCAGGACAGGAGCCCT
TTATCAATTTTGGCATTGCATATGCAACTGACATGATTTTGACGGACTGACTTTTGCATCTGTATCTTGTGTTGAATGTG
CAATTTTTCACCGAATGTGGAAGCAGGAGATCCAACTGGTCGGCATCCCTAGGGTCTGGATCCACATGTCCCTAGAGATG
TACATCTAATGTTCATTCTGTATCGAAGGTCTTCTGTTGAAATTTTTTATGCTTTTGTTGCATGATCATCAAGGTAGAGA
AAAATTGAGGCAGTTTTTTATATCTTTACCCAATACCCAAATGGCTTTTACGGAGGTAGAAATTCCATTGTATTTCTTGG
TGCTCACAAAAATAATGGTGTAAAAAAATCCGATGCTTCTAATTTAGCCCGACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis