Browse Element(s) Details


Os.10751.1.S1_at

Description gb:AU075686
DB_XREF= gi:5455520
DB_XREF=AU075686
CLONE=E11271_6A
TID=Os.10751.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042H09.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4110011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10751.1.S1_at--1122--8671Chr10:21740044..21740068 (25 bp)
TGTGATTTACTTGTCTTACTGAAGA
LOC_Os10g41100
Os.10751.1.S1_at--204--7411Chr10:21740043..21740067 (25 bp)
GTGATTTACTTGTCTTACTGAAGAA
LOC_Os10g41100
Os.10751.1.S1_at--935--6531Chr10:21740041..21740065 (25 bp)
GATTTACTTGTCTTACTGAAGAACT
LOC_Os10g41100
Os.10751.1.S1_at--993--10451Chr10:21740038..21740062 (25 bp)
TTACTTGTCTTACTGAAGAACTAGC
LOC_Os10g41100
Os.10751.1.S1_at--335--2031Chr10:21740036..21740060 (25 bp)
ACTTGTCTTACTGAAGAACTAGCAT
LOC_Os10g41100
Os.10751.1.S1_at--449--7151Chr10:21740032..21740056 (25 bp)
GTCTTACTGAAGAACTAGCATGGTG
LOC_Os10g41100
Os.10751.1.S1_at--827--3651Chr10:21740030..21740054 (25 bp)
CTTACTGAAGAACTAGCATGGTGAC
LOC_Os10g41100
Os.10751.1.S1_at--593--9911Chr10:21740028..21740052 (25 bp)
TACTGAAGAACTAGCATGGTGACCC
LOC_Os10g41100
Os.10751.1.S1_at--902--1972Chr10:21740027..21740051 (25 bp)
ACTGAAGAACTAGCATGGTGACCCG
LOC_Os10g41100
Os.10751.1.S1_at--775--8999Chr10:22271963..22271982 (20 bp)
TGAAGAACTAGCATGGTGACCCGCG
NONE
Os.10751.1.S1_at--593--5379Chr10:22271963..22271983 (21 bp)
GAAGAACTAGCATGGTGACCCGCGC
NONE
Target Sequence 
TGTGATTTACTTGTCTTACTGAAGAACTAGCATGGTGACCCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis