Browse Element(s) Details


Os.46506.1.S1_at

Description gb:AK070091.1
DB_XREF= gi:32980115
TID=Os.46506.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042H09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040K18, full insert sequence.
FL= gb:AK070091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4105011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41020Os.7510.1.S1_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.7510.1.S2_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.51877.1.S1_x_at1/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46506.1.S1_at--401--5911Chr10:21718197..21718221 (25 bp)
GAGCTTCTTTGGTGTGGAGGACTTT
LOC_Os10g41050
Os.46506.1.S1_at--756--5371Chr10:21718228..21718252 (25 bp)
GAAGACAACAGCAAACCATACACAT
LOC_Os10g41050
Os.46506.1.S1_at--100--6051Chr10:21718266..21718290 (25 bp)
GAGATCAAAGAACCCGCACAAGCAC
LOC_Os10g41050
Os.46506.1.S1_at--621--8451Chr10:21718409..21718433 (25 bp)
TGGCCGGGACCAACTCCAAGGACAT
LOC_Os10g41050
Os.46506.1.S1_at--41--2851Chr10:21718447..21718471 (25 bp)
AAGTCGAGGTCGGACATTCCGGCCT
LOC_Os10g41050
Os.46506.1.S1_at--1145--2031Chr10:21718531..21718555 (25 bp)
ACTTACACGCCGAGGGAGCGGGACA
LOC_Os10g41050
Os.46506.1.S1_at--932--3971Chr10:21718577..21718601 (25 bp)
CGGTGGTTCAGTCCCTGATTGACAA
LOC_Os10g41050
Os.46506.1.S1_at--248--1211Chr10:21718617..21718641 (25 bp)
AGTTTACCTGGATTGAGTTCCCTGC
LOC_Os10g41050
Os.46506.1.S1_at--855--10751Chr10:21718629..21718653 (25 bp)
TTGAGTTCCCTGCTGTATGTTTACA
LOC_Os10g41050
Os.46506.1.S1_at--1125--7811Chr10:21718677..21718701 (25 bp)
GGTCATCACCATTATCATGCTGCAT
LOC_Os10g41050
Os.46506.1.S1_at--126--4951Chr10:21718698..21718722 (25 bp)
GCATTGCTGCTGATTGTGAGACTTA
LOC_Os10g41050
Target Sequence 
GAGCTTCTTTGGTGTGGAGGACTTTATGGACGAAGACAACAGCAAACCATACACATACAAGAAGGAGAAGAGATCAAAGA
ACCCGCACAAGCACATNTCCTTCAAGCNAGCGCACCATCGCNTACATGGAGCCCTTCACGCTCGACGTCTTCATCTCCAA
GCGCTTCGTCTCGGCGTCCCTCACCCACCGCACGACGTGCAGGCAGGTCGCGGTGGCCGGGACCAACTCCAAGGACATCA
AGNCGGCCCTCAAGTCGAGGTCGGACATTCCGGCCTGCCTTGCCGTGGGTCGCTTCCTGGCAGAGAGGGCCAAGGAGNCT
GACGTCTACACCTGCACTTACACGCCGAGGGAGCGGGACAAGTTTGAGGGGAAGATAAGGGCGGTGGTTCAGTCCCTGAT
TGACAATGGGATCAATGTGAAAGTTTACCTGGATTGAGTTCCCTGCTGTATGTTTACAGTACTACATTTGTTTCTGAAAA
TGGTCATCACCATTATCATGCTGCATTGCTGCTGATTGTGAGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis