Browse Element(s) Details


Os.7510.1.S1_at

Description gb:AK108419.1
DB_XREF= gi:32993628
TID=Os.7510.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ethylene-forming enzyme (OSJNBa0042H09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H11, full insert sequence.
FL= gb:AK108419.1 gb:AK072706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4102011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40950Os.46622.1.S1_x_at11/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950OsAffx.26978.1.S1_at1/1110+21664458..21665479Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960Os.23290.2.S1_s_at11/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.2.S1_x_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.23290.1.S1_at10/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960Os.28435.5.S1_x_at1/1110+21665876..21667896oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40990Os.52326.1.S1_at11/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.28435.5.S1_at2/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.8575.1.S1_at1/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g41000Os.52220.1.S1_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000Os.51877.1.S1_x_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41020Os.7510.1.S1_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.7510.1.S2_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.51877.1.S1_x_at1/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7510.1.S1_at--620--2911Chr10:21691583..21691607 (25 bp)
AAGGATCACACTTGCTGCATTCCAG
LOC_Os10g41020
Os.7510.1.S1_at--1058--4751Chr10:21691570..21691594 (25 bp)
GCTGCATTCCAGAGCGTTCCGCTTT
LOC_Os10g41020
Os.7510.1.S1_at--715--7391Chr10:21691506..21691530 (25 bp)
GTGAGGCACGCTACAAGACGGTTGA
LOC_Os10g41020
Os.7510.1.S1_at--1108--3211Chr10:21691493..21691517 (25 bp)
CAAGACGGTTGATGGTGCTGAGTTC
LOC_Os10g41020
Os.7510.1.S1_at--432--6471Chr10:21691344..21691368 (25 bp)
GATAACGATGCTACATCTTCCTCAT
LOC_Os10g41020
Os.7510.1.S1_at--951--6871Chr10:21691271..21691295 (25 bp)
GTATTAGTGCCCATGAGCTAACGGC
LOC_Os10g41020
Os.7510.1.S1_at--514--1951Chr10:21691219..21691243 (25 bp)
ACTGGCTGGCAGGTATGATGTCCGA
LOC_Os10g41020
Os.7510.1.S1_at--984--6251Chr10:21691203..21691227 (25 bp)
GATGTCCGAGATTGCGTACAACACG
LOC_Os10g41020
Os.7510.1.S1_at--917--2471Chr10:21691184..21691208 (25 bp)
AACACGCAGTTCCTTGGGATCCATT
LOC_Os10g41020
Os.7510.1.S1_at--1092--7651Chr10:21691169..21691193 (25 bp)
GGGATCCATTTCATATGCCAGTAAA
LOC_Os10g41020
Os.7510.1.S1_at--489--9171Chr10:21691154..21691178 (25 bp)
TGCCAGTAAAGTATTGTCCAATCCA
LOC_Os10g41020
Target Sequence 
AAGGATCACACTTGCTGCATTCCAGAGCGTTCCGCTTTCCAGCACAGTTGGCCCACTCCAGGAGCTTCTGATGAAAGGTG
AGGCACGCTACAAGACGGTTGATGGTGCTGAGTTCACCAAAGGCTACTTTGCCGCGAAGCTGGAAGGCAGGAGATACCTG
GAGAGCTTGAAGCTGGGAGTGTGAATGTGTCAGGATGAGTAGTTTNTGCTTCTCTTTGATTCTTTTGTTTCGGTGAATGG
ATAACGATGCTACATCTTCCTCATCCTGGTACAATTCAGCTGGTATTTTCCTTGACCATACACTCAACTGGAGTATTAGT
GCCCATGAGCTAACGGCACAGAGAACAATGGAACATATGGTAGAACTGGCTGGCAGGTATGATGTCCGAGATTGCGTACA
ACACGCAGTTCCTTGGGATCCATTTCATATGCCAGTAAAGTATTGTCCAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis