Browse Element(s) Details

Os.52220.1.S1_at

Description

gb:AK065705.1
DB_XREF= gi:32975723
TID=Os.52220.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035F20, full insert sequence.
FL= gb:AK065705.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g41000	11/11	retrotransposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g40934	Os.28435.4.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.1.S1_a_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.4.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.23290.2.S1_x_at	2/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950	Os.46622.1.S1_x_at	11/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950	OsAffx.26978.1.S1_at	1/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960	Os.23290.2.S1_s_at	11/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.2.S1_x_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.1.S1_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_x_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40990	Os.52326.1.S1_at	11/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990	Os.28435.5.S1_at	2/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990	Os.8575.1.S1_at	1/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g41000	Os.52220.1.S1_at	11/11	10	+	21685261..21689413	retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000	Os.51877.1.S1_x_at	11/11	10	+	21685261..21689413	retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41020	Os.7510.1.S1_at	11/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020	Os.7510.1.S2_at	11/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020	Os.51877.1.S1_x_at	1/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41030	Os.18330.1.S2_at	11/11	10	+	21694510..21706564	Agenet domain containing protein, expressed
LOC_Os10g41030	Os.18330.1.S1_at	11/11	10	+	21694510..21706564	Agenet domain containing protein, expressed
LOC_Os10g41030	Os.18330.1.S3_at	10/11	10	+	21694510..21706564	Agenet domain containing protein, expressed
LOC_Os10g41040	Os.14119.2.S1_x_at	11/11	10	+	21709793..21714041	expressed protein
LOC_Os10g41040	Os.14119.1.S1_x_at	6/11	10	+	21709793..21714041	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52220.1.S1_at--548--21	1	Chr10:21685339..21685363 (25 bp)	ATTTGTGTACTCTATATGCATACGA	LOC_Os10g41000
Os.52220.1.S1_at--1122--695	1	Chr10:21685333..21685357 (25 bp)	GTACTCTATATGCATACGAGTTGAG	LOC_Os10g41000
Os.52220.1.S1_at--576--187	1	Chr10:21685318..21685342 (25 bp)	ACGAGTTGAGAGTAACAGCCACTAA	LOC_Os10g41000
Os.52220.1.S1_at--717--601	1	Chr10:21685311..21685335 (25 bp)	GAGAGTAACAGCCACTAACGGAGCC	LOC_Os10g41000
Os.52220.1.S1_at--1072--115	1	Chr10:21685308..21685332 (25 bp)	AGTAACAGCCACTAACGGAGCCCCA	LOC_Os10g41000
Os.52220.1.S1_at--408--979	1	Chr10:21685296..21685320 (25 bp)	TAACGGAGCCCCACATGACACTGGC	LOC_Os10g41000
Os.52220.1.S1_at--625--587	1	Chr10:21685291..21685315 (25 bp)	GAGCCCCACATGACACTGGCAGTCT	LOC_Os10g41000
Os.52220.1.S1_at--897--67	1	Chr10:21685282..21685306 (25 bp)	ATGACACTGGCAGTCTTTATCGGTA	LOC_Os10g41000
Os.52220.1.S1_at--217--217	1	Chr10:21685279..21685303 (25 bp)	ACACTGGCAGTCTTTATCGGTAGCA	LOC_Os10g41000
Os.52220.1.S1_at--590--391	1	Chr10:21685276..21685300 (25 bp)	CTGGCAGTCTTTATCGGTAGCAATA	LOC_Os10g41000
Os.52220.1.S1_at--394--827	1	Chr10:21685274..21685298 (25 bp)	GGCAGTCTTTATCGGTAGCAATAAA	LOC_Os10g41000

Target Sequence

ATTTGTGTACTCTATATGCATACGAGTTGAGAGTAACAGCCACTAACGGAGCCCCACATGACACTGGCAGTCTTTATCGG
TAGCAATAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis