Browse Element(s) Details


Os.10776.1.S1_at

Description gb:AK066917.1
DB_XREF= gi:32976935
TID=Os.10776.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089M04, full insert sequence.
FL= gb:AK066917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4003011/11UDP-sugar transporter sqv-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os02g40020OsAffx.12421.1.S1_at11/112+24222964..24223346hypothetical protein
LOC_Os02g40030Os.10776.1.S1_at11/112+24229799..24233912UDP-sugar transporter sqv-7, putative, expressed
LOC_Os02g40040Os.17597.1.S1_at11/112+24234223..24236689expressed protein
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10776.1.S1_at--641--10611Chr02:24232440..24232462 (23 bp)
TTCGGCCTGATGTGGTGCAACGGAC
LOC_Os02g40030
Os.10776.1.S1_at--484--2571Chr02:24232551..24232572 (22 bp)
AACGGACTTGTCTGTGGGCCTTCAG
LOC_Os02g40030
Os.10776.1.S1_at--989--7551Chr02:24232563..24232587 (25 bp)
GGGCCTTCAGTACTTTTTCTGACAT
LOC_Os02g40030
Os.10776.1.S1_at--1088--8291Chr02:24232610..24232634 (25 bp)
GGCTATAGAATTTCCCTACCTCTAT
LOC_Os02g40030
Os.10776.1.S1_at--724--6831Chr02:24232881..24232900 (20 bp)
GTTTCAGGCGGTGCTGCTATTCTCA
LOC_Os02g40030
Os.10776.1.S1_at--750--111Chr02:24232894..24232918 (25 bp)
ATTCTCATGCATGCTAGCTTTTCTG
LOC_Os02g40030
Os.10776.1.S1_at--31--4851Chr02:24232918..24232942 (25 bp)
GCTAAACTACACTATCTTCTGGAAT
LOC_Os02g40030
Os.10776.1.S1_at--570--5211Chr02:24232951..24232975 (25 bp)
GAATTCTGCACTCACACAATCGATG
LOC_Os02g40030
Os.10776.1.S1_at--1049--10131Chr02:24233611..24233635 (25 bp)
TATCGGGCAAGGTCTTGGCTTTCTT
LOC_Os02g40030
Os.10776.1.S1_at--1114--2831Chr02:24233753..24233777 (25 bp)
AAGTAGAGTTCGTGCTGTTTGCTCC
LOC_Os02g40030
Os.10776.1.S1_at--629--6871Chr02:24233815..24233839 (25 bp)
GTATTTAACACTTCAGTCCTCCTGA
LOC_Os02g40030
Target Sequence 
TTCGGCCTGATGTGGTGCAACGGACTTGTCTGTGGGCCTTCAGTACTTTTTCTGACATATATTCAGGGTGACCTGAAGAA
GGCTATAGAATTTCCCTACCTCTATTCCCCTGGGTTTCAGGCGGTGCTGCTATTCTCATGCATGCTAGCTTTTCTGCTAA
ACTACACTATCTTCTGGAATACAATCCTGAATTCTGCACTCACACAATCGATGTGTGGTAATTTGAAGGATTTCTTCACC
GTCGGAATTGGCTGGGTTCTGTTTGGTGGGCTTCCTTTTGATCTGCTTAATGTTATCGGGCAAGGTCTTGGCTTTCTTGG
CTCTGGCTTGTATGCCTACTGCAAGATCAAAGGGAAGTAGATACGGATGTCCAGTGGGGGTCTGAAGGAGAGTAGATATT
GAAGTTTATTTTGGAGGGGCCAATGTGCCATACTGAAGTAGAGTTCGTGCTGTTTGCTCCTGCATATGGGAGAGAAATTT
TGTAGGTTTTCCTGTATGTATTTAACACTTCAGTCCTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis