Browse Element(s) Details


Os.10855.1.S1_at

Description gb:AF435641.1
DB_XREF= gi:17385962
TID=Os.10855.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10855 (NCBI UniGene Cluster)
DEF=Oryza sativa CSLC9 mRNA, complete cds.
PROD=CSLC9
FL= gb:AF435641.1 gb:AK121805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5606011/11glycosyl transferase, group 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56040Os.19099.1.S1_x_at1/113+31849671..31851842retrotransposon, putative, centromere-specific
LOC_Os03g56050OsAffx.25729.1.S1_at11/113+31861000..31866063AP2 domain containing protein, expressed
LOC_Os03g56060Os.10855.1.S1_at11/113+31869482..31873355glycosyl transferase, group 2 family protein, expressed
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10855.1.S1_at--1113--9571Chr03:31870424..31870448 (25 bp)
TCATCCCATACCTACTTTTCGAGAA
LOC_Os03g56060
Os.10855.1.S1_at--768--9511Chr03:31870367..31870391 (25 bp)
TCTCTGGTCTGTTCCAGCTTGGAAA
LOC_Os03g56060
Os.10855.1.S1_at--327--5831Chr03:31870293..31870317 (25 bp)
GACCTCATTTCTTTGGCACCCAAAG
LOC_Os03g56060
Os.10855.1.S1_at--263--4411Chr03:31870240..31870264 (25 bp)
GCCTAACCTCGACGCTATTGCAAAG
LOC_Os03g56060
Os.10855.1.S1_at--202--5031Chr03:31870213..31870237 (25 bp)
GCAGTCCGCTCCTAGAAAGGACGTA
LOC_Os03g56060
Os.10855.1.S1_at--400--5571Chr03:31870162..31870186 (25 bp)
GAAAGAGCTTGCACTCTCATTGCTC
LOC_Os03g56060
Os.10855.1.S1_at--513--1591Chr03:31870123..31870147 (25 bp)
AGCTCGCAGTTTGCTCTCGAAACAG
LOC_Os03g56060
Os.10855.1.S1_at--826--6691Chr03:31870075..31870099 (25 bp)
GTTCCAGGGCATATCTTTCTTGTTA
LOC_Os03g56060
Os.10855.1.S1_at--625--10551Chr03:31870059..31870083 (25 bp)
TTCTTGTTAGTAGGCCTTGATCTCA
LOC_Os03g56060
Os.10855.1.S1_at--612--3811Chr03:31869965..31869989 (25 bp)
CTCCAGGGATGTTGTGTCGAAGCTC
LOC_Os03g56060
Os.10855.1.S1_at--822--7211Chr03:31869950..31869974 (25 bp)
GTCGAAGCTCTTTGGCGATATTGAA
LOC_Os03g56060
Target Sequence 
TCATCCCATACCTACTTTTCGAGAACACCATGTCCGTGACAAAATTCAATGCCATGATCTCTGGTCTGTTCCAGCTTGGA
AATGCATACGAGTGGGTGGTGACCAAGAAGTCAGGCCGATCATCGGAGGGCGACCTCATTTCTTTGGCACCCAAAGAGTT
GAAACACCAAAAAACTGAATCGGCGCCTAACCTCGACGCTATTGCAAAGGAGCAGTCCGCTCCTAGAAAGGACGTAAAGA
AGAAGCACAACCGGATATACAAGAAAGAGCTTGCACTCTCATTGCTCCTCCTAACCGCTGCAGCTCGCAGTTTGCTCTCG
AAACAGGGTATACATTTCTACTTCCTCCTGTTCCAGGGCATATCTTTCTTGTTAGTAGGCCTTGATCTCATAGGCGAGCA
GATTGAGTAAACTGTGAAAAGCATGATAGATGTTAAAAAAACAGTGACAATGGAGGGTGCTCCAGGGATGTTGTGTCGAA
GCTCTTTGGCGATATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis