Browse Element(s) Details


Os.10880.1.S1_at

Description gb:AK119767.1
DB_XREF= gi:37989390
TID=Os.10880.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E10, full insert sequence.
FL= gb:AK060585.1 gb:AK119767.1 gb:AK101505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4527011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA
LOC_Os04g45270Os.10880.1.S1_at11/114+26527617..26529441Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g45280Os.47891.1.S1_at11/114+26534844..26538208HIT domain containing protein, expressed
LOC_Os04g45290Os.19361.1.S1_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os04g45290Os.19361.1.S2_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10880.1.S1_at--997--4011Chr04:26528085..26528109 (25 bp)
CGTCGGGTGCCTGATGCTGATGAAC
LOC_Os04g45270
Os.10880.1.S1_at--853--3811Chr04:26527894..26527918 (25 bp)
CTGCTGGTGCGGACTTACGATGATC
LOC_Os04g45270
Os.10880.1.S1_at--1031--6511Chr04:26527863..26527887 (25 bp)
GATTTGTCCTAAGCTCTCAGGTGTA
LOC_Os04g45270
Os.10880.1.S1_at--1092--1591Chr04:26527819..26527843 (25 bp)
AGCTGCCATGCATGTATCTGTAGGA
LOC_Os04g45270
Os.10880.1.S1_at--667--10551Chr04:26527791..26527815 (25 bp)
TTCTTCTTGCGACGTTACTGTTTTG
LOC_Os04g45270
Os.10880.1.S1_at--833--9911Chr04:26527776..26527800 (25 bp)
TACTGTTTTGTTTCTCGTGTTTCTG
LOC_Os04g45270
Os.10880.1.S1_at--51--6851Chr04:26527758..26527782 (25 bp)
GTTTCTGCTTGTAAATCTGTCTTGC
LOC_Os04g45270
Os.10880.1.S1_at--891--3771Chr04:26527734..26527758 (25 bp)
CTCTGCCCGTATGGAACCTGATTAA
LOC_Os04g45270
Os.10880.1.S1_at--559--5971Chr04:26527679..26527703 (25 bp)
GAGACATGTCTCCACACGGGTTTTT
LOC_Os04g45270
Os.10880.1.S1_at--659--3211Chr04:26527665..26527689 (25 bp)
CACGGGTTTTTGCTACCAACAGAGA
LOC_Os04g45270
Os.10880.1.S1_at--236--2371Chr04:26527627..26527651 (25 bp)
AAACTCGAACCTTTGGCACATTTGA
LOC_Os04g45270
Target Sequence 
CGTCGGGTGCCTGATGCTGATGAACGTCGGCGGGAACAACGACGACGGCGAAGACGGTGGTGGTCCGGCAGGGACGCTTG
GCAACTTCCAGCAGCAGGGGTTCGAGGTGGTGTACGACGTGGACGCCGGTCGCGTCGGCTTCGCCCGCCGCCGGTGTACG
GACCTGTGGGACACGCTCTCGCGCCGGTGAGCTGCTGGTGCGGACTTACGATGATCGAGTATGATTTGTCCTAAGCTCTC
AGGTGTACAGAGTACAGACTAGTGGTAGCTGCCATGCATGTATCTGTAGGATTGTTCTTCTTGCGACGTTACTGTTTTGT
TTCTCGTGTTTCTGCTTGTAAATCTGTCTTGCTCTGCCCGTATGGAACCTGATTAACGATTAACCGATGGCAACGACTCG
GACGGCGAGACATGTCTCCACACGGGTTTTTGCTACCAACAGAGAAACTGCAGTAAACAAACTCGAACCTTTGGCACATT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis