Browse Element(s) Details

Os.10925.1.S1_at

Description

gb:CA767611
DB_XREF= gi:27549116
DB_XREF=AF53-Rpf_13_P12_T7_048.ab1
CLONE=C0004980
TID=Os.10925.1
CNT=25
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.10925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023A02, full insert sequence
FL= gb:AY062186.1 gb:AK065390.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08480	11/11	Type III restriction enzyme, res subunit family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08440	Os.19406.1.S1_at	11/11	6	+	4136249..4141662	Two-component response regulator ARR12, putative, expressed
LOC_Os06g08450	OsAffx.15311.1.S1_at	11/11	6	+	4141852..4149977	ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os06g08460	NA	NA	6	+	4160338..4161798	Exo70 exocyst complex subunit family protein
LOC_Os06g08470	Os.15792.1.S1_at	11/11	6	+	4161948..4166025	expressed protein
LOC_Os06g08480	Os.10925.1.S1_at	11/11	6	+	4166231..4182563	Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490	Os.6257.1.S1_at	11/11	6	+	4188087..4189564	expressed protein
LOC_Os06g08500	OsAffx.27510.2.S1_at	11/11	6	+	4191208..4193417	Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500	OsAffx.27510.2.S1_x_at	11/11	6	+	4191208..4193417	Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510	OsAffx.4769.1.S1_s_at	11/11	6	+	4199932..4201852	expressed protein
LOC_Os06g08510	OsAffx.4769.1.S1_at	11/11	6	+	4199932..4201852	expressed protein
LOC_Os06g08510	Os.37590.1.S1_at	10/11	6	+	4199932..4201852	expressed protein
LOC_Os06g08520	NA	NA	6	+	4204533..4205996	transposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0006333	biological_process	chromatin assembly or disassembly
GO:0008283	biological_process	cell proliferation
GO:0009739	biological_process	response to gibberellic acid stimulus
GO:0016481	biological_process	negative regulation of transcription
GO:0016568	biological_process	chromatin modification
GO:0048364	biological_process	root development
GO:0003677	molecular_function	DNA binding
GO:0003678	molecular_function	DNA helicase activity
GO:0003682	molecular_function	chromatin binding
GO:0004386	molecular_function	helicase activity
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10925.1.S1_at--213--885	1	Chr06:4167047..4167071 (25 bp)	TGATCAGTCACAAGTTTCCCATCTT	LOC_Os06g08480
Os.10925.1.S1_at--609--275	1	Chr06:4166876..4166900 (25 bp)	AAGACAGTGCTGTTCCTGCACTCAA	LOC_Os06g08480
Os.10925.1.S1_at--139--935	1	Chr06:4166850..4166874 (25 bp)	TCGCATTTCGGTGACAAGGCAGCTT	LOC_Os06g08480
Os.10925.1.S1_at--880--785	1	Chr06:4166820..4166844 (25 bp)	GGTTTAGCCAATAGCCTCCATAAGT	LOC_Os06g08480
Os.10925.1.S1_at--724--677	1	Chr06:4166775..4166799 (25 bp)	GTTAGTCGCATCTTGAGATCCCATG	LOC_Os06g08480
Os.10925.1.S1_at--788--599	1	Chr06:4166700..4166724 (25 bp)	GAGACCACGTCTCCAAAAGATCCAG	LOC_Os06g08480
Os.10925.1.S1_at--255--233	1	Chr06:4166685..4166709 (25 bp)	AAAGATCCAGCAACCGAGGTGCCTT	LOC_Os06g08480
Os.10925.1.S1_at--1060--529	1	Chr06:4166605..4166629 (25 bp)	GAAGGAGGAGCCACCCACTGTTAAG	LOC_Os06g08480
Os.10925.1.S1_at--813--983	1	Chr06:4166498..4166522 (25 bp)	TAAACTGGCTGTAGCTTTTACCATA	LOC_Os06g08480
Os.10925.1.S1_at--1104--307	1	Chr06:4166453..4166477 (25 bp)	AATCACTCTAAGCTAGTCTCATCCT	LOC_Os06g08480
Os.10925.1.S1_at--932--715	1	Chr06:4166438..4166462 (25 bp)	GTCTCATCCTGTAGAGGCCTGGACA	LOC_Os06g08480

Target Sequence

TGATCAGTCACAAGTTTCCCATCTTTACAACAAGATGTGCTTTGTCCTTGAAGACAGTGCTGTTCCTGCACTCAACTCGC
ATTTCGGTGACAAGGCAGCTTCCTCCGGTTTAGCCAATAGCCTCCATAAGTTTGAAGCTGTATGCGAAGACGTTAGTCGC
ATCTTGAGATCCCATGAAAATGGTACCACTCCCAAAGAGGAAGTTATGCTAGATGCAAGCTCCAAAGAGACCACGTCTCC
AAAAGATCCAGCAACCGAGGTGCCTTCGTCAGCTTCCAAAGAAGCTACGCCTCCAGTACAAGATCCAGTCATAGAGGCAG
TGAAGGAGGAGCCACCCACTGTTAAGGCGGAGGACAAAATGGAAATCGATAGTTAATTTGTAGGAATCATAACGATAATA
TCGAACCTTTTTCGTCTAATCTAATCGCTAAACTGGCTGTAGCTTTTACCATATTACAAGTTGTAAACTAAAAAATCACT
CTAAGCTAGTCTCATCCTGTAGAGGCCTGGACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis